Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O09
         (664 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M33950-1|AAA28746.1|  260|Drosophila melanogaster protein ( D.me...   291   4e-79
AY122197-1|AAM52709.1|  260|Drosophila melanogaster LD45889p pro...   291   4e-79
AE013599-2982|AAS64796.1|  260|Drosophila melanogaster CG9193-PB...   291   4e-79
AE013599-2981|AAF57493.1|  260|Drosophila melanogaster CG9193-PA...   291   4e-79
AE014134-3147|AAF53835.1|  255|Drosophila melanogaster CG10262-P...   216   2e-56
AB195794-1|BAE94851.1|  255|Drosophila melanogaster proliferatin...   216   2e-56
BT021268-1|AAX33416.1|  216|Drosophila melanogaster RE50044p pro...   171   1e-42
AY167137-3|AAO17673.1|   36|Drosophila melanogaster PCNA protein.      59   6e-09
BT011030-1|AAR30190.1|  147|Drosophila melanogaster RE45652p pro...    33   0.46 
AE014296-1917|AAS65040.1|  235|Drosophila melanogaster CG6216-PB...    33   0.46 
AE014296-1916|AAF50087.2|  355|Drosophila melanogaster CG6216-PA...    33   0.46 
AE014298-2710|AAS65404.1|  715|Drosophila melanogaster CG32549-P...    30   2.4  
AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA...    29   5.6  
AE014297-1654|AAF54928.2| 1012|Drosophila melanogaster CG32473-P...    29   7.5  

>M33950-1|AAA28746.1|  260|Drosophila melanogaster protein (
           D.melanogaster proliferatingcell nuclear antigen (PCNA)
           gene, complete cds. ).
          Length = 260

 Score =  291 bits (715), Expect = 4e-79
 Identities = 134/168 (79%), Positives = 155/168 (92%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 339
           MFEARL +++ILKK+L+AIKDLL +ATFDC D+GIQLQAMDNSHVSLVSLTLR+DGFDK+
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKF 60

Query: 340 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 519
           RCDRN+SMGMNLGSM+KILKCA ++D VT+KAQDNAD VT +FES NQEKVSDYEMKLMN
Sbjct: 61  RCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMN 120

Query: 520 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 663
           LD EHLGIPET++SC +RMP+ EFARICRDL+QF ES+VI CTKEGVK
Sbjct: 121 LDQEHLGIPETDFSCVVRMPAMEFARICRDLAQFSESVVICCTKEGVK 168


>AY122197-1|AAM52709.1|  260|Drosophila melanogaster LD45889p
           protein.
          Length = 260

 Score =  291 bits (715), Expect = 4e-79
 Identities = 134/168 (79%), Positives = 155/168 (92%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 339
           MFEARL +++ILKK+L+AIKDLL +ATFDC D+GIQLQAMDNSHVSLVSLTLR+DGFDK+
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKF 60

Query: 340 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 519
           RCDRN+SMGMNLGSM+KILKCA ++D VT+KAQDNAD VT +FES NQEKVSDYEMKLMN
Sbjct: 61  RCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMN 120

Query: 520 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 663
           LD EHLGIPET++SC +RMP+ EFARICRDL+QF ES+VI CTKEGVK
Sbjct: 121 LDQEHLGIPETDFSCVVRMPAMEFARICRDLAQFSESVVICCTKEGVK 168


>AE013599-2982|AAS64796.1|  260|Drosophila melanogaster CG9193-PB,
           isoform B protein.
          Length = 260

 Score =  291 bits (715), Expect = 4e-79
 Identities = 134/168 (79%), Positives = 155/168 (92%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 339
           MFEARL +++ILKK+L+AIKDLL +ATFDC D+GIQLQAMDNSHVSLVSLTLR+DGFDK+
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKF 60

Query: 340 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 519
           RCDRN+SMGMNLGSM+KILKCA ++D VT+KAQDNAD VT +FES NQEKVSDYEMKLMN
Sbjct: 61  RCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMN 120

Query: 520 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 663
           LD EHLGIPET++SC +RMP+ EFARICRDL+QF ES+VI CTKEGVK
Sbjct: 121 LDQEHLGIPETDFSCVVRMPAMEFARICRDLAQFSESVVICCTKEGVK 168


>AE013599-2981|AAF57493.1|  260|Drosophila melanogaster CG9193-PA,
           isoform A protein.
          Length = 260

 Score =  291 bits (715), Expect = 4e-79
 Identities = 134/168 (79%), Positives = 155/168 (92%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 339
           MFEARL +++ILKK+L+AIKDLL +ATFDC D+GIQLQAMDNSHVSLVSLTLR+DGFDK+
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQLQAMDNSHVSLVSLTLRSDGFDKF 60

Query: 340 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 519
           RCDRN+SMGMNLGSM+KILKCA ++D VT+KAQDNAD VT +FES NQEKVSDYEMKLMN
Sbjct: 61  RCDRNLSMGMNLGSMAKILKCANNEDNVTMKAQDNADTVTIMFESANQEKVSDYEMKLMN 120

Query: 520 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 663
           LD EHLGIPET++SC +RMP+ EFARICRDL+QF ES+VI CTKEGVK
Sbjct: 121 LDQEHLGIPETDFSCVVRMPAMEFARICRDLAQFSESVVICCTKEGVK 168


>AE014134-3147|AAF53835.1|  255|Drosophila melanogaster CG10262-PA
           protein.
          Length = 255

 Score =  216 bits (528), Expect = 2e-56
 Identities = 89/168 (52%), Positives = 135/168 (80%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 339
           M EARL ++ +LKK+++A+K+++ Q T DC +NG++LQ+MDNSHVSLV+L+L +D F+K+
Sbjct: 1   MLEARLSQTLLLKKIVDALKEIIAQGTLDCSENGLELQSMDNSHVSLVALSLASDCFEKF 60

Query: 340 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 519
            CDRN+S+G++L S+ K+LKCA   D VTIKA D  + +T  FES  +E+ +DYE+KL+N
Sbjct: 61  HCDRNVSLGLDLKSLGKVLKCANSDDAVTIKAVDRPEKITLSFESDGKERTADYELKLLN 120

Query: 520 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 663
           LD +H+ IP+ +Y+C I++PSSEFARICRD+S F ES+ I+C+ +G++
Sbjct: 121 LDQDHMEIPKKDYTCFIQLPSSEFARICRDMSMFDESLTIACSSKGIR 168


>AB195794-1|BAE94851.1|  255|Drosophila melanogaster proliferating
           cell nuclear antigen2 protein.
          Length = 255

 Score =  216 bits (528), Expect = 2e-56
 Identities = 89/168 (52%), Positives = 135/168 (80%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 339
           M EARL ++ +LKK+++A+K+++ Q T DC +NG++LQ+MDNSHVSLV+L+L +D F+K+
Sbjct: 1   MLEARLSQTLLLKKIVDALKEIIAQGTLDCSENGLELQSMDNSHVSLVALSLASDCFEKF 60

Query: 340 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 519
            CDRN+S+G++L S+ K+LKCA   D VTIKA D  + +T  FES  +E+ +DYE+KL+N
Sbjct: 61  HCDRNVSLGLDLKSLGKVLKCANSDDAVTIKAVDRPEKITLSFESDGKERTADYELKLLN 120

Query: 520 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVK 663
           LD +H+ IP+ +Y+C I++PSSEFARICRD+S F ES+ I+C+ +G++
Sbjct: 121 LDQDHMEIPKKDYTCFIQLPSSEFARICRDMSMFDESLTIACSSKGIR 168


>BT021268-1|AAX33416.1|  216|Drosophila melanogaster RE50044p
           protein.
          Length = 216

 Score =  171 bits (415), Expect = 1e-42
 Identities = 71/129 (55%), Positives = 103/129 (79%)
 Frame = +1

Query: 277 MDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNV 456
           MDNSHVSLV+L+L +D F+K+ CDRN+S+G++L S+ K+LKCA   D VTIKA D  + +
Sbjct: 1   MDNSHVSLVALSLASDCFEKFHCDRNVSLGLDLKSLGKVLKCANSDDAVTIKAVDRPEKI 60

Query: 457 TFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMV 636
           T  FES  +E+ +DYE+KL+NLD +H+ IP+ +Y+C I++PSSEFARICRD+S F ES+ 
Sbjct: 61  TLSFESDGKERTADYELKLLNLDQDHMEIPKKDYTCFIQLPSSEFARICRDMSMFDESLT 120

Query: 637 ISCTKEGVK 663
           I+C+ +G++
Sbjct: 121 IACSSKGIR 129


>AY167137-3|AAO17673.1|   36|Drosophila melanogaster PCNA protein.
          Length = 36

 Score = 58.8 bits (136), Expect = 6e-09
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = +1

Query: 160 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQ 267
           MFEARL +++ILKK+L+AIKDLL +ATFDC D+GIQ
Sbjct: 1   MFEARLGQATILKKILDAIKDLLNEATFDCSDSGIQ 36


>BT011030-1|AAR30190.1|  147|Drosophila melanogaster RE45652p
           protein.
          Length = 147

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 382 MSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQ-EKVSDYEMKLMNLDLEHLGIPETEY 558
           MSK+      K TV      +  N+  V E     EKV DY+M+ + +  E + I E +Y
Sbjct: 1   MSKLDDLLSKKKTVVPVLDLSRSNIQTVEEFKRLLEKVPDYKMRPVKVRAEEIKIREKDY 60

Query: 559 SCTIRMPSSEFARICR 606
           +   +MP  E  ++ R
Sbjct: 61  A--FKMPKKEMRKLLR 74


>AE014296-1917|AAS65040.1|  235|Drosophila melanogaster CG6216-PB,
           isoform B protein.
          Length = 235

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 382 MSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQ-EKVSDYEMKLMNLDLEHLGIPETEY 558
           MSK+      K TV      +  N+  V E     EKV DY+M+ + +  E + I E +Y
Sbjct: 1   MSKLDDLLSKKKTVVPVLDLSRSNIQTVEEFKRLLEKVPDYKMRPVKVRAEEIKIREKDY 60

Query: 559 SCTIRMPSSEFARICR 606
           +   +MP  E  ++ R
Sbjct: 61  A--FKMPKKEMRKLLR 74


>AE014296-1916|AAF50087.2|  355|Drosophila melanogaster CG6216-PA,
           isoform A protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 382 MSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQ-EKVSDYEMKLMNLDLEHLGIPETEY 558
           MSK+      K TV      +  N+  V E     EKV DY+M+ + +  E + I E +Y
Sbjct: 1   MSKLDDLLSKKKTVVPVLDLSRSNIQTVEEFKRLLEKVPDYKMRPVKVRAEEIKIREKDY 60

Query: 559 SCTIRMPSSEFARICR 606
           +   +MP  E  ++ R
Sbjct: 61  A--FKMPKKEMRKLLR 74


>AE014298-2710|AAS65404.1|  715|Drosophila melanogaster CG32549-PA,
           isoform A protein.
          Length = 715

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 656 PSFVHEITIDSPNCERSRQILANSELGMRIVQLYSVSGIP 537
           PS ++ I I +PNC+RSR+   N  L      L  +   P
Sbjct: 69  PSRIYPIHIGAPNCQRSRRNKGNRRLSCSYASLGRMQATP 108


>AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA
            protein.
          Length = 5106

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 658  LLLLCMKSPLILQTVRDPGRF*QIQNLACE*CSCIQSL-EYLN 533
            +++ C K+PL++     PGR  +IQ L     +C +SL EYL+
Sbjct: 2110 IMVDCAKNPLVVPFCTVPGRLVEIQGLGIGLENCQKSLNEYLD 2152


>AE014297-1654|AAF54928.2| 1012|Drosophila melanogaster CG32473-PA,
           isoform A protein.
          Length = 1012

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +1

Query: 151 NINMFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGF 330
           +IN+ E+R L    L++VL   K     A+FDCD     L ++  S++S  +    ADG 
Sbjct: 202 SINLDESRELLLITLREVLSMNKAYTLSASFDCD-----LSSLVGSYISNYT---NADGV 253

Query: 331 DK 336
           D+
Sbjct: 254 DR 255


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,833,911
Number of Sequences: 53049
Number of extensions: 558118
Number of successful extensions: 1082
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)