Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O05
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    31   0.15 
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    29   0.77 
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    28   1.4  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    27   1.8  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    27   2.4  
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    27   3.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.1  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   5.5  
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    25   7.2  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    25   9.5  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -3

Query: 190  HGLILTKIFPDYI*GPGECRSC*GYNLVFPIIGREPLHFT*KTKNPSRLLNETCARVAHC 11
            H L+L+KI   ++   G  R   G NL F    ++ L F+ K+       N+T A V   
Sbjct: 969  HPLLLSKITSSFLISNGTKRENIGLNLKFDARNQKVLGFSRKSTKGWEFSNKTVALVKEY 1028

Query: 10   VNT 2
            +NT
Sbjct: 1029 INT 1031


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 482 LEIMFLGTQRAHRNRKLGTILCKYSIEVAKKLK 580
           ++I+ L    A+RNR +GT L +Y+ E A + K
Sbjct: 71  IQILSLAVLPAYRNRSIGTKLLEYACETAAEGK 103


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 419 EFMAEVD--GRCNFFEKFQADCSLEIMFLGTQRAHRNRKLGTI 541
           +FM  +   G+ NFFEK  +D  +  +  GT+RA ++    TI
Sbjct: 345 DFMENISLAGKTNFFEKKVSDYQIAGVMSGTKRAEKDDHTFTI 387


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 462 FSKKLHLPSTSAMNSISAREEVCVQRSSANISKKGFSV 349
           +  KL   S+S  NSIS R+E     + AN+S  G S+
Sbjct: 479 YEPKLEQHSSSKRNSISTRKEEDAASALANLSAVGRSI 516


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 638 SCLNNFVLNHLKLRMKQAQFSVSSRLLSSTCIEWFQVFCFY 516
           +C+ +FV N ++         VS R L    +  FQ+ C Y
Sbjct: 143 ACIKHFVCNDMEDERNSVSIDVSQRALREVYLMPFQLACKY 183


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 338 VSSSTEKPFFEIFAEERCTQTSSRALIEFMAEVDGRCNFFEKFQA 472
           V+S++E+   + FA +    TSS    EF+AEV  +C  F+K  A
Sbjct: 13  VASASER--IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGA 55


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 473 DCSL-EIMFLGTQRAHRNRKLGTILCKYSIEVA 568
           +CSL E  F   +R H  R  G I+CKY ++ A
Sbjct: 65  NCSLCETEFTLFRRKHHCRICGKIICKYCLKEA 97


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 335 QVSSSTEKPFFEIFAEERCTQTSSRALIEFMAEVDGRCNFFEK 463
           +V   +E  F + F E+    T++   +E    VD RC FFEK
Sbjct: 512 RVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEK 554


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 78  WSGSRPMMGNTRLYP*QLRHSP 143
           W GSR  MG T++    L H+P
Sbjct: 60  WKGSRIFMGKTKVMAKALGHTP 81


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 648 SRGFMLE*FCPKSSKVKDETGPVFSF 571
           S+G ++E + P S  V+D  GPV  F
Sbjct: 185 SKGIIVEGYGPLSPLVRDAQGPVAEF 210


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 300 AERLQQSLL-ISYRYRVQLKNLSSKYLQKNVAHKLPL 407
           ++RL + L+ + Y Y    + L SK+   N+ H+L L
Sbjct: 351 SDRLSKRLISVDYDYATVCETLDSKFSNWNLPHRLVL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,508
Number of Sequences: 5004
Number of extensions: 51211
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)