Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O05
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0246 - 23886749-23886764,23887195-23887385                       28   5.6  
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334...    27   9.9  

>04_04_0246 - 23886749-23886764,23887195-23887385
          Length = 68

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 248 TAPTIPLLPMDSCLPLCRCTRTHLDKNLP*LYLRPRGMSQ 129
           TAP  P  P D   P   C+R   D ++P  +  PR +SQ
Sbjct: 23  TAPIKPAFPGDPMFPGVHCSRLRRDNDVP--WPSPRVLSQ 60


>11_06_0606 +
           25432471-25432517,25433098-25433173,25433272-25433448,
           25433576-25433653,25433749-25433853,25434042-25434108,
           25434219-25434280,25434371-25434510,25434717-25434843,
           25434917-25435031,25435220-25435308,25435699-25435782,
           25435961-25436737
          Length = 647

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 459 SKKLHLPSTSAMNSISAREEVCVQRSSANI-SKKGFSV 349
           SKK   P T   + + ++  VCV   S++I +KKGFS+
Sbjct: 328 SKKKRHPETWVFDILESKWSVCVVPPSSSITTKKGFSM 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,267,516
Number of Sequences: 37544
Number of extensions: 319939
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)