Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O05
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical
           protein F40F4.7 protein.
          Length = 245

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 446 CNFFEKFQADCSLEIMFLGTQRAHRNRKLGTILCKYSIEVAKKLK 580
           C   +    + SL +M LGT  A+R   +GTIL  Y++++  K++
Sbjct: 150 CCRIDDISDEKSLYLMTLGTLAAYRQIGIGTILIDYALKLCNKME 194


>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 635 CLNNFVLNHLKLRMKQAQFSVSSRLLSSTCIEWFQVFCF 519
           C++ F+L + K    Q +F V +R      IE  +  CF
Sbjct: 202 CISTFILKYNKRCEYQTRFKVGARFQKQELIESTKAICF 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,571
Number of Sequences: 27780
Number of extensions: 294445
Number of successful extensions: 783
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)