Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O04
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    29   0.77 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   3.1  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   4.1  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   7.2  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   7.2  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   7.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.5  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 351 SERDRHGRYAPSHHNQTEERPSGHR 425
           +ER+R+GR +PS H++  E+P G R
Sbjct: 201 TERNRYGR-SPSPHSRFSEKPRGER 224


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 387 HHNQTEERPSGHRRSFNLVSFTVPCEFAARITGAA-LPAEDLGAGDQCSRGVRCGVR-SD 560
           +H + +    GH ++  LVS +    F ++I+ AA   A +L A       VR G + SD
Sbjct: 743 YHRELKSSKDGHEQASPLVSSSPSGSFTSQISPAATTTATNLDAVSLSPSTVRTGSQISD 802

Query: 561 VSVVCIDTVVKSL 599
           +    I T  K++
Sbjct: 803 IGNDAISTTRKTV 815


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 653 ECTSFTANRNCIAHTRRQQRFNDSVNAHNANV 558
           E T FT  R C  HT  Q  F +      +N+
Sbjct: 344 ESTCFTEKRRCAKHTSWQVIFTEDFELQESNI 375


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 169 RWSASFAAGGRWACFNMAYLARRDSPSRRLVLRHAAGLFAAK 44
           RW+   + GGR+ACF +A L     P+    + + A +F A+
Sbjct: 440 RWN-EISTGGRFACFVIAQLFSNFGPNSTTFI-YPAEVFPAR 479


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 495 PAEDLGAGDQCSRGVRCGVRS-DVSVVCIDTVVKSLLSSCVCNTISV 632
           P  + GA +Q       G  S D S +C     K+LLS   C TI V
Sbjct: 306 PTANNGAQEQNQSSSSAGNTSNDFSTLCSQGSDKTLLSDASCTTILV 352


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 59  TGRMPENQSAGWRVT 103
           TG  PEN   GWR+T
Sbjct: 197 TGVKPENSKVGWRLT 211


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 169 RWSASFAAGGRWACFNMAYLARRDSPSRRLVLRHAAGLFAAK 44
           RW+   + GGR+ACF +A L     P+    + + A +F A+
Sbjct: 441 RWN-EISTGGRFACFVIAQLFSNFGPNSTTFI-YPAEVFPAR 480


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = -3

Query: 647 TSFTANRNCIAHTRRQQRFNDSVNAHNANVTSYTTANSSGALVAGAEI 504
           T+FT++ +    T  Q   + SV++ ++  +SY++  SS ++ +   I
Sbjct: 777 TAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSI 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,867
Number of Sequences: 5004
Number of extensions: 29879
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)