Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O04
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0535 + 18298244-18298486,18299937-18300353,18300680-183007...    29   3.2  
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590...    29   3.2  
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611...    28   5.6  
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602...    28   5.6  
04_04_0019 + 22180898-22181476                                         28   7.5  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    28   7.5  
12_02_0106 + 13654686-13655789                                         27   9.9  
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    27   9.9  

>08_02_0535 +
           18298244-18298486,18299937-18300353,18300680-18300757,
           18300893-18301045,18301131-18301239,18301321-18301487,
           18301571-18301954
          Length = 516

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 35  VLTFSSEQTGRMPENQSAGWR 97
           +L F  +++GR+P NQ A WR
Sbjct: 49  ILFFEGQRSGRLPANQRATWR 69


>02_05_0682 +
           30857876-30858106,30858187-30858399,30858867-30859067,
           30859832-30860086,30860189-30860884
          Length = 531

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 26  RGRVLTFSSEQTGRMPENQSAGWR 97
           R  +L F ++++GR+P NQ   WR
Sbjct: 42  RKSLLYFEAQRSGRLPHNQRVAWR 65


>12_02_0709 - 22359705-22360292,22360396-22360560,22360650-22361157,
            22361159-22361577,22362261-22362722,22362853-22364415
          Length = 1234

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 375  YAPSHHNQTEERPSGHRRSFNLV 443
            Y P+H+ QT +  SG  R +NL+
Sbjct: 1008 YLPAHYFQTHDDASGETREYNLI 1030


>02_02_0700 +
           13058446-13058790,13059352-13059582,13060083-13060241,
           13060483-13060635,13061619-13061702,13061847-13061915,
           13062374-13062421,13062487-13062621
          Length = 407

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 474 RITGAALPAEDLGAGDQCSRGVRCGVRSDVSVVCIDTVVKSLLSSCVCNTISVRC-EAG 647
           +I+ A   +ED  A D     V CG       V +   + SLLS C  NTI+  C EAG
Sbjct: 319 KISAADPMSEDCSAEDTFDAIVTCGTS-----VLLHMHIYSLLSFCSINTIAAICQEAG 372


>04_04_0019 + 22180898-22181476
          Length = 192

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 423 RRSFNLVSFTVPCEFAARITGAALPAEDLGAGDQCSRGVRCGVRSDVSVVCIDTV 587
           R  F+L+  TV C  AA    A+  A +    D C++    G R D++  C+ T+
Sbjct: 4   RLVFSLL-LTVACSHAALAAAASSSAVE----DTCAKATASGSRKDLAPFCVSTL 53


>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
            35738117-35738172,35738452-35738547,35738844-35738961,
            35739406-35739672,35740023-35740124,35740302-35740659,
            35740750-35740863,35741045-35741676,35741895-35742103,
            35742597-35742819,35743419-35743538,35743888-35743914,
            35744281-35745045,35745431-35748511
          Length = 2142

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 183  PRRPHHHLPLNVSTLDSSKHSVGGTF 260
            PR P  H P++  T   SKH+ GG F
Sbjct: 1054 PRAPFGHSPVDPRTPSYSKHTDGGRF 1079


>12_02_0106 + 13654686-13655789
          Length = 367

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 122 HGVPSAP*LAIPPTGSPACGRFVRC*MLGRG 30
           H  PS P  A  P G P  GR+ R   +G G
Sbjct: 36  HSAPSPPASAEAPLGDPIGGRYQRMSRIGSG 66


>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 305  QYPWWRRYLSPRRLN*RTGPPRALCP 382
            Q+ +WR ++  R  N  T  PR LCP
Sbjct: 1789 QHCFWRGFVCVRGFNMETRAPRPLCP 1814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,087
Number of Sequences: 37544
Number of extensions: 299245
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)