Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O04
         (655 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC132862-1|AAI32863.1| 1316|Homo sapiens ubiquitin specific pept...    30   8.3  
BC060846-1|AAH60846.2| 1202|Homo sapiens USP42 protein protein.        30   8.3  
AY618868-1|AAT67238.1| 1324|Homo sapiens ubiquitin specific prot...    30   8.3  
AK022759-1|BAB14232.1| 1198|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AJ601395-1|CAE53097.1| 1325|Homo sapiens ubiquitin-specific prot...    30   8.3  

>BC132862-1|AAI32863.1| 1316|Homo sapiens ubiquitin specific peptidase
            42 protein.
          Length = 1316

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 354  ERDRHGRYAPSHHNQTEERPS-GHRRSFNLVS 446
            ERDR  R+AP HH    +R S G RRS    S
Sbjct: 987  ERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018


>BC060846-1|AAH60846.2| 1202|Homo sapiens USP42 protein protein.
          Length = 1202

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 354  ERDRHGRYAPSHHNQTEERPS-GHRRSFNLVS 446
            ERDR  R+AP HH    +R S G RRS    S
Sbjct: 987  ERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018


>AY618868-1|AAT67238.1| 1324|Homo sapiens ubiquitin specific protease
            42 protein.
          Length = 1324

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 354  ERDRHGRYAPSHHNQTEERPS-GHRRSFNLVS 446
            ERDR  R+AP HH    +R S G RRS    S
Sbjct: 987  ERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018


>AK022759-1|BAB14232.1| 1198|Homo sapiens protein ( Homo sapiens cDNA
            FLJ12697 fis, clone NT2RP1000522, weakly similar to
            UBIQUITIN CARBOXYL-TERMINAL HYDROLASE DUB-1 (EC
            3.1.2.15). ).
          Length = 1198

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 354  ERDRHGRYAPSHHNQTEERPS-GHRRSFNLVS 446
            ERDR  R+AP HH    +R S G RRS    S
Sbjct: 987  ERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018


>AJ601395-1|CAE53097.1| 1325|Homo sapiens ubiquitin-specific protease
            42 protein.
          Length = 1325

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 354  ERDRHGRYAPSHHNQTEERPS-GHRRSFNLVS 446
            ERDR  R+AP HH    +R S G RRS    S
Sbjct: 987  ERDRQDRHAPEHHPGHGDRLSPGERRSLGRCS 1018


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,568,469
Number of Sequences: 237096
Number of extensions: 1351384
Number of successful extensions: 3214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3210
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)