Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O04
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    29   3.8  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    29   3.8  
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    29   3.8  

>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 492 LPAEDLGAGDQCSRGVRCGVRSDVSVVCIDTVVKSLLSSCVCNTISVRCEAGA 650
           L  ED  A + CS GV          +C D    S       N ++ +CEAG+
Sbjct: 248 LEKEDSCASNPCSHGVCISFSGGFQCICDDGYSGSYCQEGKDNCVNNKCEAGS 300


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 492 LPAEDLGAGDQCSRGVRCGVRSDVSVVCIDTVVKSLLSSCVCNTISVRCEAGA 650
           L  ED  A + CS GV          +C D    S       N ++ +CEAG+
Sbjct: 248 LEKEDSCASNPCSHGVCISFSGGFQCICDDGYSGSYCQEGKDNCVNNKCEAGS 300


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 387  HHNQTEERPSGHRRSFNLVSFTVPCEFAARITGAALPAED-LGAGDQCSRGVRCGVRSDV 563
            H     +RP  H+   ++++  +  + A  IT   +P ED  GA  +     R  ++ D 
Sbjct: 1227 HLISVSDRPHSHKEKMDMLTPKIGAKAANIITKLLIPVEDNFGAFKEKVACFRKKLKVDA 1286

Query: 564  SVVCIDTVVKSL 599
            + V +D  ++ L
Sbjct: 1287 ARVLVDKAIRDL 1298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,812,273
Number of Sequences: 27780
Number of extensions: 196603
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)