Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_O02
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 215 5e-57
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 106 2e-24
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 89 4e-19
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 86 5e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 84 2e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 83 4e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 81 1e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 77 2e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 74 2e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 69 4e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 66 4e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 63 4e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 62 7e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 60 3e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 60 4e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 58 1e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 3e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 55 8e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 6e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 36 0.005
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 25 7.2
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.5
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 215 bits (525), Expect = 5e-57
Identities = 101/151 (66%), Positives = 119/151 (78%), Gaps = 2/151 (1%)
Frame = +3
Query: 207 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 386
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 387 LCQAKSGMGKTAVFVLATLQQLAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 566
LCQAKSGMGKTAVFVL+TLQQ+ P + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 567 SVFFGGMPIQKDEEVL--KTACPHIVVGTPG 653
+VF+GG+ I++D E K+ PHIVV TPG
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPG 182
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 106 bits (255), Expect = 2e-24
Identities = 56/128 (43%), Positives = 81/128 (63%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 449
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 450 LAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 629
+ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 630 HIVVGTPG 653
HIVVGTPG
Sbjct: 164 HIVVGTPG 171
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 89.4 bits (212), Expect = 4e-19
Identities = 53/128 (41%), Positives = 69/128 (53%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 449
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 450 LAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 629
+ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 630 HIVVGTPG 653
H+VVGTPG
Sbjct: 139 HVVVGTPG 146
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 85.8 bits (203), Expect = 5e-18
Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = +3
Query: 264 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 443
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 444 QQLAPSESHVYV--LVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 617
+ + YV LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 618 TACPHIVVGTPG 653
PH+VV TPG
Sbjct: 241 KH-PHVVVATPG 251
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 83.8 bits (198), Expect = 2e-17
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Frame = +3
Query: 237 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 416
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 417 TAVFVLATLQQLAPSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 587
TA F++ L++L V VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 588 PIQKDEEVLKTACPHIVVGTPG 653
++ E+ L+ P IV+ TPG
Sbjct: 369 SLKLQEQELRKR-PDIVIATPG 389
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 82.6 bits (195), Expect = 4e-17
Identities = 46/128 (35%), Positives = 74/128 (57%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 449
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 450 LAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 629
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 630 HIVVGTPG 653
H++V TPG
Sbjct: 166 HVLVCTPG 173
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 81.4 bits (192), Expect = 1e-16
Identities = 49/130 (37%), Positives = 66/130 (50%)
Frame = +3
Query: 264 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 443
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 444 QQLAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 623
Q + S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 624 CPHIVVGTPG 653
H+V GTPG
Sbjct: 140 -QHVVSGTPG 148
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 77.4 bits (182), Expect = 2e-15
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 2/144 (1%)
Frame = +3
Query: 228 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 407
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 408 MGKTAVFVLATLQQLAP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 581
GKTA FV+ ++ L + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 582 GMPIQKDEEVLKTACPHIVVGTPG 653
G+ +++ +L + P IVV TPG
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPG 198
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 73.7 bits (173), Expect = 2e-14
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 6/133 (4%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 446
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 447 -----QLAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 611
Q+ ++ ++ L++ TRELA Q+ E+ + + S + +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 612 LKTACPHIVVGTP 650
L P IV+ TP
Sbjct: 136 LLLDLPDIVIATP 148
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 69.3 bits (162), Expect = 4e-13
Identities = 36/128 (28%), Positives = 70/128 (54%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 449
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 450 LAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 629
+ S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 630 HIVVGTPG 653
H+VV TPG
Sbjct: 127 HVVVATPG 134
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 66.1 bits (154), Expect = 4e-12
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +3
Query: 285 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLAPSE 464
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + +
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 465 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 629
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 630 HIVVGTPG 653
IVV TPG
Sbjct: 543 EIVVCTPG 550
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 62.9 bits (146), Expect = 4e-11
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 449
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 450 L----APSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 617
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 618 TACPHIVVGTPG 653
+++V TPG
Sbjct: 210 KGV-NLLVATPG 220
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 62.1 bits (144), Expect = 7e-11
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Frame = +3
Query: 285 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 446
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 447 QLAPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 620
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 621 ACPHIVVGTPG 653
HIVV TPG
Sbjct: 375 GA-HIVVATPG 384
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 60.1 bits (139), Expect = 3e-10
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Frame = +3
Query: 210 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 383
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 384 ILCQAKSGMGKTAVFVLATLQQ------LAPSESHVYVLVMCHTRELAFQISKEYERFSK 545
++ + +G GKT + L + L+P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 546 YMSGVRVSVFFGGMP 590
S +R + +GG+P
Sbjct: 221 -SSRIRNTCVYGGVP 234
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 59.7 bits (138), Expect = 4e-10
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 443
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 444 QQLAPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 623
++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 624 CPHIVVGTPG 653
IV+GTPG
Sbjct: 230 DAQIVIGTPG 239
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Frame = +3
Query: 321 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQLAPSE-----SHVYVL 482
GFE + VQ + + + + QAK+G GKT F+L + + + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 483 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 653
++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TPG
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPG 172
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.4 bits (130), Expect = 3e-09
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Frame = +3
Query: 324 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL---APSESHVYVLVMCH 494
++ P+ +Q P + G D++ A++G GKT F + LQ L + ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 495 TRELAFQISKEYERFSKYMSG--VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 653
TRELA Q YE + + G ++ V +GG P + K A +++GTPG
Sbjct: 245 TRELAIQ---TYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNA--SVIIGTPG 294
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 55.2 bits (127), Expect = 8e-09
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 449
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 450 LA----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 617
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 618 TACPHIVVGTPG 653
+I+V TPG
Sbjct: 160 RM--NILVCTPG 169
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 45.6 bits (103), Expect = 6e-06
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Frame = +3
Query: 270 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 449
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 450 LA---PSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 596
+ E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 597 KDEEVLKTACPHIVVGTPG 653
D + P +V+GTPG
Sbjct: 123 NDLASFREKNPSVVIGTPG 141
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 342 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLAPSESHVY-VLVMCHTRELAFQI 518
+Q IP D+L A +G GKT ++ LQ+L Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 519 SKEYERFS 542
++ E+ S
Sbjct: 132 YRQAEKLS 139
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 401 LGLAKYVHTEDGLRNAFVLNFGRMLKTAINNSAE 300
LGL +HT D + L+ G +L+ A N AE
Sbjct: 147 LGLMNQIHTFDEISGVITLDSGVILENADNFLAE 180
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 4 QKKFGLTPKKPE 39
QK+FG TP+KPE
Sbjct: 191 QKEFGATPEKPE 202
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 315 DCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG-KTAVFVLATLQQLAPSESHVYV-LVM 488
D +++ + + + A + D + G+ +T + L + A + H+Y L+M
Sbjct: 79 DLCYQYLRKAASQNVVYAEMFFDPQLHTRRGISFETVIKGLIRARDDAMRDFHIYSQLIM 138
Query: 489 CHTRELAFQISKE 527
C RE++F+ ++E
Sbjct: 139 CFIREMSFENAEE 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,130
Number of Sequences: 5004
Number of extensions: 54842
Number of successful extensions: 142
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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