Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_O01
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   196   2e-51
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   4.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   7.0  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   7.0  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  196 bits (479), Expect = 2e-51
 Identities = 89/158 (56%), Positives = 115/158 (72%)
 Frame = +2

Query: 167 GFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLA 346
           GFDYKTC+V++A++QQSP+IA G+H  +  EE+GAGDQG+MFGYATDET E +PLT++LA
Sbjct: 85  GFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGIMFGYATDETPEKLPLTILLA 144

Query: 347 HKLNQKIAELRRNGEFWWARPDSKTQVTCXYVFAGGATXPXXVHTVXVSLQHSEKITLXT 526
           HKLN  ++  RR+G   W RPD+KTQVT  Y    GA  P  V T+ VS QH++ I+   
Sbjct: 145 HKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHADSISTED 204

Query: 527 LRDEIREKVIKEVIPAQYLDERTVIHINPCGLFIIGXP 640
           LR EI EK+IK  +PA  LDE+TV HI P G F++G P
Sbjct: 205 LRSEILEKIIKPTVPAHLLDEKTVYHIQPSGRFVVGGP 242


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 28/88 (31%), Positives = 46/88 (52%)
 Frame = -3

Query: 450 PANTYXQVTCVFESGLAHQNSPFRLSSAIF*LSLCASTTVNGMHSSVSSVA*PNIKPWSP 271
           P++T  +V+ +  S L+  +    L+S+ F  SL +ST+ +    SVSS +       +P
Sbjct: 150 PSSTSVEVS-ISSSSLSSSDP---LTSSTF-SSLSSSTSSS--QPSVSSTSSSTFSSAAP 202

Query: 270 APTSSSFLFSCTPAAMFGDCWSSASITL 187
             TSSS+L S +  +      SS+S TL
Sbjct: 203 TSTSSSYLSSSSVVSSSSSPSSSSSSTL 230


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 420 VFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 301
           +F  G A++  N+PF +S +++  S   +T ++G+H  V ++
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
 Frame = -2

Query: 409 WSCPPKFSISPELCNFLIEF---------VCKHYSQRHAFFCLICCITEHQAL 278
           W C PK  ++   C FL  F           KH ++R    C  C +  HQ+L
Sbjct: 46  WVCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHLNER-LQLCPKCIVKYHQSL 97


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 390 SPFRLSSAIF*LSLCASTTVN--GMHSSVSSVA*PNIKPWSPAPTSSSFLFS 241
           +P+   + +F +S+  S+T    G+  S+  +    + P SP+ + S+FLF+
Sbjct: 206 NPWAAGTQLFLVSVLQSSTGERVGLSGSIDMLKDEYLSPQSPSFSKSNFLFA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,283
Number of Sequences: 5004
Number of extensions: 49946
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)