Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_N03
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0782 + 23114532-23114596,23116259-23116316,23116445-231165... 75 7e-14
06_01_0050 - 444267-444914 31 0.83
04_04_0523 - 25900802-25902548,25902640-25903037 29 3.3
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 29 4.4
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 29 4.4
05_04_0384 - 20809397-20811547 29 4.4
02_05_0019 - 25025218-25026964,25027084-25027478 29 4.4
02_05_0016 - 25004075-25005821,25006394-25006527 29 4.4
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 28 5.9
04_03_0130 - 11622139-11623325,11626144-11627116 28 7.7
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 28 7.7
>12_02_0782 +
23114532-23114596,23116259-23116316,23116445-23116516,
23117468-23117587,23117668-23117769,23118254-23118274
Length = 145
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/86 (38%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Frame = +1
Query: 319 EKHRKYKVMEYTLATKRRRLRQQIPDLARTIEVIEKLKEQK---EEVETQFLLSDQVFVK 489
++ ++YK++E L ++R L+ +IPD+ + ++++ L+ +K E + F LS+ ++ +
Sbjct: 21 QRLQQYKIVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKALGEALTADFELSEGIYSR 80
Query: 490 ANVPPTKSVCLWLGANVMLEYSLEDA 567
A + T SVCLWLGANVMLEYS ++A
Sbjct: 81 AKIEDTDSVCLWLGANVMLEYSCDEA 106
>06_01_0050 - 444267-444914
Length = 215
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 301 VLKSLDEKHRKYKVMEYTLATK-RRRLRQQIPDLARTIEVIEKLKEQKEE 447
VLK +KH K ++ A K RRRL + + + A I +EK ++QK E
Sbjct: 12 VLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKRE 61
>04_04_0523 - 25900802-25902548,25902640-25903037
Length = 714
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 287 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 138
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 426 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLAN 472
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 249 IYKFSFWYSRIRLRVRGFYSVSFHF 175
+Y +S +Y ++ ++ GF+ SF+F
Sbjct: 532 VYLYSIYYYHVKTKMSGFFQTSFYF 556
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 28.7 bits (61), Expect = 4.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 249 IYKFSFWYSRIRLRVRGFYSVSFHF 175
+Y +S +Y ++ ++ GF+ SF+F
Sbjct: 527 VYLYSIYYYHVKTKMSGFFQTSFYF 551
>05_04_0384 - 20809397-20811547
Length = 716
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 287 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 138
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 428 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLGN 474
>02_05_0019 - 25025218-25026964,25027084-25027478
Length = 713
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 287 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 138
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 425 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLGN 471
>02_05_0016 - 25004075-25005821,25006394-25006527
Length = 626
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 287 SALIGDFINSSTLSTNSASGIPEYDLGFEGSTPSPSIFIYCEVYIQFLEN 138
S L+ DF N+ S S P D GF+G+ ++ YC +QFL N
Sbjct: 338 SELVNDFYNNGLPSNLSGGRNPSLDYGFKGA--EIAMASYCS-ELQFLGN 384
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 249 IYKFSFWYSRIRLRVRGFYSVSFHF 175
+Y +S +Y ++ ++ GF+ SF+F
Sbjct: 524 VYLYSVYYYHVKTKMSGFFQTSFYF 548
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -3
Query: 545 NITLAPSHKHTDFVGGTLAFTNT*SLRRNCVSTSSFCSFNFSIT-SIVRAKSGI-CCRNR 372
N+ A + ++GG + SL CV+T + N ++T V A SGI CCR
Sbjct: 139 NVFTAIGCRTLAYIGGDNVDADVGSLTTGCVATCRLQAGNLTVTDDDVGACSGIGCCRTS 198
Query: 371 LLLVANVYSI 342
+ + Y +
Sbjct: 199 IPVGLQYYYV 208
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 370 RRLRQQIPDLARTIEVIEKLKEQKEEVETQFLLSDQVFVKANVPPTKS-VCLWLGANV 540
+RL+ +P L E+ E KEQ+ + ++ V + PTKS C LG N+
Sbjct: 371 KRLKVDVPHLVHVNEM-EASKEQQPAANETYASAETVQSEVTNSPTKSPCCTSLGDNI 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,812
Number of Sequences: 37544
Number of extensions: 225479
Number of successful extensions: 657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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