Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_N02
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   0.70 
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   1.2  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    24   8.7  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 290  FVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIY 189
            F  +F++   CY S   +I    L+F+YR   +Y
Sbjct: 1028 FQIVFVLAVICYSSPMFMILIVPLFFLYRYNQVY 1061


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 299 ILYFVFLFIIFNYCYMSLFRI 237
           ILY++++ + F YC M+ F I
Sbjct: 140 ILYYIYVAVSFIYCVMAFFTI 160


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 302 GILYFVFLFIIFNYCYMSLFRIIF 231
           GI+  +F FI     Y S FR++F
Sbjct: 60  GIVLIIFFFITSGLAYFSYFRVLF 83


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 297 DALRSVVIKDFDESILQKMSSN 362
           DA  S   KD +ES+ QK++SN
Sbjct: 379 DATYSYYHKDLEESVHQKLNSN 400


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = -3

Query: 305 EGILYFVFLFII 270
           +GI+YF+FLF++
Sbjct: 416 QGIIYFIFLFVM 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,876
Number of Sequences: 5004
Number of extensions: 23845
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)