Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_N02
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 32 0.15
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 32 0.15
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 32 0.15
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 32 0.15
Z66562-4|CAA91465.1| 258|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 27 4.4
AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical ... 27 4.4
Z74032-7|CAD54140.1| 330|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane... 27 5.8
AC024766-1|AAF59490.2| 160|Caenorhabditis elegans Hypothetical ... 27 5.8
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 7.7
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 27 7.7
AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine r... 27 7.7
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
C48B4.4c protein.
Length = 1704
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 296 LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 177
L F+F+F+ F++ Y L +I + LYF IY V F
Sbjct: 1184 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1223
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
C48B4.4b protein.
Length = 1691
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 296 LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 177
L F+F+F+ F++ Y L +I + LYF IY V F
Sbjct: 1171 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1210
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
C48B4.4a protein.
Length = 1689
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 296 LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 177
L F+F+F+ F++ Y L +I + LYF IY V F
Sbjct: 1169 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1208
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 296 LYFVFLFIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCF 177
L F+F+F+ F++ Y L +I + LYF IY V F
Sbjct: 1184 LIFLFMFLAFHWMYDHLAIVILFWFLYFFSSVPFIYAVSF 1223
>Z66562-4|CAA91465.1| 258|Caenorhabditis elegans Hypothetical
protein F42E11.3 protein.
Length = 258
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 302 GILYFVFLFIIFNYCYMSLFRIIFCFVLYFIYR 204
GI+ + FI ++ M LF I+ CF++++IYR
Sbjct: 150 GIIITLISFITPDH--MKLFMIVVCFLIWWIYR 180
>Z68160-2|CAA92290.2| 403|Caenorhabditis elegans Hypothetical
protein D1046.2 protein.
Length = 403
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 279 QEYKVEDALRSVVIKDFDESILQKMSSNEIPPKSR 383
+E EDA SVV+ D D+ I+ + E P +R
Sbjct: 353 EEVVEEDAFTSVVVDDADDEIVGPRAQQETPALTR 387
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 418 AFFACRAALISSLDFGGISLEDIFCNILSSKS--FMTTERRASSTLYSCLLFSITAICP 248
A+ + LIS++ G + L ++ SSK + AS+ CLLF ITA P
Sbjct: 46 AYVSMSLTLISAISIGVLFLLAAKPSMFSSKLGLILCAVAAASTVTAGCLLFPITATAP 104
>AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical
protein D1065.1 protein.
Length = 585
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 329 KIFYDY*AEGILYFVFLFIIFNYCYM-SLFRIIFCFVLYFIYR 204
+++ +Y G+L ++F + F Y Y+ ++ I ++YF++R
Sbjct: 81 EMWLEYSIFGVLMYLFAILYFTYFYLFVIYPNIINSIIYFLHR 123
>Z74032-7|CAD54140.1| 330|Caenorhabditis elegans Hypothetical
protein F35B12.9 protein.
Length = 330
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 278 FIIFNYCYMSLFRIIFCFVLYFIYRTKDIYTVCFGK 171
F+ FN+ + ++ + F++ TK YT CF K
Sbjct: 265 FLYFNFNTFDIL-VLSVLIAAFVFATKKAYTKCFPK 299
>Z46676-4|CAA86669.2| 822|Caenorhabditis elegans Hypothetical
protein C08B11.4 protein.
Length = 822
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 255 IAVIENNKQEYKVEDALRSVVIKDFDESILQKMSS 359
+ VI N+K YK + +L S D+DE+ + M S
Sbjct: 16 LTVISNSKSSYKYDGSLFSSKELDYDETDTKAMGS 50
>AF173372-1|AAD51972.1| 822|Caenorhabditis elegans transmembrane
protein NRF-6 protein.
Length = 822
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 255 IAVIENNKQEYKVEDALRSVVIKDFDESILQKMSS 359
+ VI N+K YK + +L S D+DE+ + M S
Sbjct: 16 LTVISNSKSSYKYDGSLFSSKELDYDETDTKAMGS 50
>AC024766-1|AAF59490.2| 160|Caenorhabditis elegans Hypothetical
protein Y39G10AL.1 protein.
Length = 160
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 16 CQLINITVFICNRLIICDL 72
C L I VF+C +ICDL
Sbjct: 7 CMLFGIAVFMCIESLICDL 25
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 148 ELEEID*DLPKQTV*ISFVR*IKYKTKQKI 237
E EEI D KQT + IKYKTK+++
Sbjct: 3065 EFEEIRNDSEKQTNDYEIIDHIKYKTKRRL 3094
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 148 ELEEID*DLPKQTV*ISFVR*IKYKTKQKI 237
E EEI D KQT + IKYKTK+++
Sbjct: 3065 EFEEIRNDSEKQTNDYEIIDHIKYKTKRRL 3094
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 302 GILYFVFLFIIFNYCYMSLFRIIF 231
G +YF L I+ NYC FR +F
Sbjct: 433 GYVYFGTLIIVMNYCRERSFRRLF 456
>AC024882-17|AAF60937.1| 321|Caenorhabditis elegans Serpentine
receptor, class z protein28 protein.
Length = 321
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 293 YFVFLFIIFNYCYMSLFRIIFCFVLYFIY 207
Y FL I+ + +++L +I C L+++Y
Sbjct: 75 YCTFLAIVTSNAFLNLSTLILCVCLFYLY 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,810,376
Number of Sequences: 27780
Number of extensions: 130746
Number of successful extensions: 421
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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