Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_M24
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    36   3e-04
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +2

Query: 179 IITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRP--CDLA 352
           ++TGANSGIGK   +    +G KV      V K     + +V E  +K     P  CDL+
Sbjct: 11  LVTGANSGIGKCLIECLVGKGMKVIGIAPQVDK----MKTLVEELKSKPGKLVPLQCDLS 66

Query: 353 STASIREFVARFKGEEPHLHVLVNNAGV 436
           +   I + +   +     + +L+NNA +
Sbjct: 67  NQNDILKVIEWVEKNLGAIDILINNATI 94


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 352 GQVAGSAVHVLVVRLKHDV 296
           G  AGS +H+ ++ L H+V
Sbjct: 107 GTSAGSLLHICMLELGHEV 125


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 438 WNHPRESLRTASR 476
           W+ PRES +T S+
Sbjct: 47  WSRPRESAQTTSK 59


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 109 VHIQRLLQWSSVRPVRPCRQQNNYNYWC 192
           VH+  + Q++S+  +      +N NY C
Sbjct: 658 VHVTNMDQYNSILMIEHLSPDHNGNYSC 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,738
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)