Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_M22
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    30   0.34 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    29   0.79 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    28   1.0  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   3.2  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   4.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.2  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   7.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.4  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   7.4  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.4  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   9.7  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 210 EDSNFFSSPSTGVSF-TILIFFSIIVGSTSKVIEFFVIL 97
           E +NFF+   TG SF  IL+FFS++V   S+ I   V+L
Sbjct: 318 ETTNFFA---TGFSFFIILLFFSLLVAMASRFIVEMVLL 353


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = +2

Query: 371 SSEDPSSYRVPMSIGEGRTEHDKSGAPATAYDVAVNPEFFKKIEKDELFQTFFLTVVFEG 550
           + ++P S    +       E+    A     +     +FFK +EK+E +     +   +G
Sbjct: 659 NDKEPDSSSSTLISDRQELEYRNPNAETVKLEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718

Query: 551 LQDKYQFEIDMQKFT-ILKNRKSI-GTLQSHRIQIRDI 658
           LQ +Y   I  Q +  IL+N K +   L+++ I    +
Sbjct: 719 LQ-RYTSMIGNQIYEGILQNEKELRSKLEAYHINCNKV 755


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = +2

Query: 440 SGAPATAYDVAVNPEFFKKIEKDELFQTFFLTVVFEGLQDKYQFEIDMQKFTILKNRKSI 619
           +G  A  YD + +   F  ++KD L + + +   F    DK     ++    I   R   
Sbjct: 403 TGISAKEYDFSYDGTVFATVDKDALIKIYTVPTTFPSTPDKRPVPSEVSPIAIFTTRMER 462

Query: 620 GTLQSH 637
           G  +++
Sbjct: 463 GPSKNY 468


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 149 KNMRIVKETPVEGELKKLLSSVDTVPS 229
           K+M +  + P+EGE+++ ++S   V S
Sbjct: 214 KSMAVYSDLPIEGEIRQFMNSTSKVMS 240


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 503 SQFS*RTLD*QPHRKQLPVHLIYHVQSDLPQYSWALC 393
           S  S  + D  P  K+LP HL+      + QYS A C
Sbjct: 408 SSSSESSTDGNPQEKKLPEHLVKRKSRLVRQYSLAWC 444


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 303  FTNTFLLSGILVVLTQKPGVGLTSREGTVSTEDSNFFSSPSTGVSFT 163
            FT+T+L SG   V       G      T ST  S  ++S S+  S T
Sbjct: 963  FTSTYLSSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSST 1009


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 167 LRSSYFSP*LWDQHLRLSNF 108
           LR  YF+P  W  HL   N+
Sbjct: 465 LREKYFTPSRWISHLNFQNY 484


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 566 QFEIDMQKFTILKNRKSIGTLQSHRIQIRDIQ 661
           + ++  Q+FT LKN K+I +L+S  +   D Q
Sbjct: 640 KLKLKYQQFTTLKNLKNIDSLESLELGHEDEQ 671


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 279 GILVVLTQKPGVGLTSREGTVSTEDSNFFSSPSTGVSFTILI 154
           G  +VLT       TS +G+ S++ S    + S GVS + ++
Sbjct: 480 GSSLVLTASASPSSTSVDGSSSSDSSEASGAASVGVSISAIV 521


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 500 EKDELFQTF---FLTVVFEGLQDKYQFEIDMQKF 592
           EKDE   T    FL   F G QD+  F+I M+ F
Sbjct: 656 EKDEERLTVISEFLKSCFSGCQDRRSFQITMEDF 689


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 423  GLNMINQVHRQLLTMWLSIQSSSRKLRKMNFSKHF 527
            G N I +   +LLT+WL   +   +L K +  K+F
Sbjct: 1831 GTNHIYESMPKLLTLWLDFGAEELRLSKDDGEKYF 1865


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 133 INI*GYRIFRHIAYLLLWKQIN----SSILAIFSFVH 35
           +N  GYR+ + +  L++W++ N    + IL I  ++H
Sbjct: 71  LNEHGYRVGQKLVELVVWRERNPKRETRILGILQYIH 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,790
Number of Sequences: 5004
Number of extensions: 67142
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)