Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_M22
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0063 + 26100877-26101144,26101683-26101990,26102133-261028... 32 0.35
01_06_0096 - 26408159-26408911,26409012-26409440 31 0.62
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 30 1.9
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 2.5
02_05_0274 - 27371048-27371203,27371750-27371779,27372018-273721... 29 3.3
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534... 29 3.3
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 28 7.6
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690... 28 7.6
>01_06_0063 +
26100877-26101144,26101683-26101990,26102133-26102849,
26103338-26103466,26103594-26103698,26103732-26103797,
26104102-26104302,26104437-26104562
Length = 639
Score = 32.3 bits (70), Expect = 0.35
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = -1
Query: 345 VMSLGHGMASV*HIFTNTFLLSGILVVLTQKPGVGLTSREGTVSTEDSNFFSSPSTGVSF 166
V G G+ S H+ G V+ +PG GLTSR ED N + G
Sbjct: 373 VHGFGGGVFSWRHVTNLLSRQVGCTVLAFDRPGWGLTSRPRRKDWEDKNLPNPYELGSQV 432
Query: 165 TILIFFSIIVGSTSKVI 115
+LI F +G S V+
Sbjct: 433 DLLISFCSDMGLRSVVL 449
>01_06_0096 - 26408159-26408911,26409012-26409440
Length = 393
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 212 VDTVPSRLVKPTPGFCVKTTRIPDNKKVFVNICQTDAIPCPRDITNDELMYILS 373
+D + L++P G + PD K+V N C +P P D ND L+++LS
Sbjct: 340 MDPTAAMLLRPD-GHPSRYGHWPDEKRVLYNDCIHWCLPGPVDAWNDMLLHMLS 392
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 299 VNICQTDAIPCPRDITNDELMYILSSEDPSSYRVPMSIGEGRTEHDKSGAPATA 460
VN+ P P+ I + + +D S R+P S GR + D S P A
Sbjct: 563 VNLNNAVQFPLPKQIDSGNRPQKVHQDDAGSARIPDSYSVGRRDIDSSRPPVVA 616
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 179 VEGELKKLLSSVDTVPSRLVKPTP 250
V E K +L S D +P+R+++PTP
Sbjct: 529 VPSESKSMLKSSDLLPTRMIQPTP 552
>02_05_0274 -
27371048-27371203,27371750-27371779,27372018-27372194,
27372598-27372677,27373464-27373505,27373632-27373788,
27374028-27374074,27375205-27375445
Length = 309
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 161 IVKETPVEG-ELKKLLSSVDTVPSRLVKPTPGFCVKTTRIPDNK 289
+V+ P+ G L ++ V +PS L+ P CVK +PD K
Sbjct: 262 LVEMLPISGVSLGSSVAGVSVLPSELISTKPRLCVKAL-VPDAK 304
>01_05_0770 -
25052100-25052525,25052718-25053042,25053220-25053464,
25053582-25054061
Length = 491
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 408 VLGKVGLNMINQVHRQLLTMWLSIQSSSRKLRKMNF--SKHFFSPLCLKDY 554
V G +GL ++ QVHR L+ +W + R LR + + F LKDY
Sbjct: 2 VYGLLGLALLWQVHRLLVRLWWQPRRLERALRAQGVRGTSYRFLTGDLKDY 52
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/121 (19%), Positives = 46/121 (38%)
Frame = +2
Query: 149 KNMRIVKETPVEGELKKLLSSVDTVPSRLVKPTPGFCVKTTRIPDNKKVFVNICQTDAIP 328
KN++ +KET +G+ K+ L ++ + K T++P N + F T I
Sbjct: 44 KNIKSIKETGTKGQSKE-LQKKESKSRKSTKDKSKKNKDMTQVPTNAEEFHKEYTTKVIR 102
Query: 329 CPRDITNDELMYILSSEDPSSYRVPMSIGEGRTEHDKSGAPATAYDVAVNPEFFKKIEKD 508
+ + ++ + + T D + PA A + E+ K+ +
Sbjct: 103 KESRTDSSSIEQVIGTSSIQEMETNEQVKSKDTSKDMTQVPANA--EGIRKEYTTKVNRQ 160
Query: 509 E 511
E
Sbjct: 161 E 161
>01_01_0880 +
6903535-6903932,6904931-6905022,6905601-6905680,
6905885-6905926,6906001-6906128,6906530-6906710,
6906801-6906979,6907469-6907717,6907950-6908193
Length = 530
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/82 (23%), Positives = 32/82 (39%)
Frame = +2
Query: 335 RDITNDELMYILSSEDPSSYRVPMSIGEGRTEHDKSGAPATAYDVAVNPEFFKKIEKDEL 514
RDI +D L + E S+ P + E E G P A +F ++K L
Sbjct: 283 RDIVDDSLTSEMMEESADSFLEPPEVQELMNEIGPVGIPLNVVTKAAEIQFLDVVDKMLL 342
Query: 515 FQTFFLTVVFEGLQDKYQFEID 580
+ G+Q ++ + +D
Sbjct: 343 GNKWLRKAT--GIQPQFPYVVD 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,151
Number of Sequences: 37544
Number of extensions: 386585
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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