Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_M02
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   1.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   4.1  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   9.5  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 488 YNLKNDDN----GVQHFEVQPETFTCESIGEPKITLSSDLSSALE-KDSGNN 628
           +N++N +N    G  H E   E +  + + EP+I  SSD+ +  + KD G+N
Sbjct: 69  HNVENHENYTMVGHDHME---EVYGDDLVNEPRIAYSSDIVATFDGKDFGSN 117


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 533 QPETFTCESIGEPKITLSSDLSSALEK 613
           +P+TF C+S  EP   ++S L    EK
Sbjct: 684 EPQTFNCDSFNEPGTEITSFLYDFDEK 710


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 395 GDIVIELTEQSXSFTGLYTADTNVIGXVXYGYNLKND 505
           G IVI L +   S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 431  SFTGLYTADTNVIGXVXYGYNLKNDDNGV---QHFEVQPETFTCESIGEPKITLSSDLSS 601
            + T +Y+ D+ ++  V     L +  N +      ++ PE ++  S+GE  + L S+   
Sbjct: 836  AMTKIYSFDSPLLDSVQVKGELISHSNRIITRSQSKLHPEEYSYVSVGEKILRLLSEEFV 895

Query: 602  ALEKDS 619
            +L KD+
Sbjct: 896  SLSKDA 901


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,186
Number of Sequences: 5004
Number of extensions: 55457
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)