Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_M02
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    28   7.5  
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293...    27   9.9  
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831...    27   9.9  

>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 223  IDRPYVVLWYPFTGFLQKLLCRTAKALHV---TKFAGF*KSISIGSHVSSKHKNQEYFQR 53
            ID  +V +W  F G+L  LL  TAKA  +    +   F  SI +    + + K      R
Sbjct: 1197 IDTEWVYMWDKFGGYLLLLLGLTAKAEQIQDEVRLRLFLDSIGLSDLSAKEIKKWMPEDR 1256

Query: 52   SHFDV 38
             HF++
Sbjct: 1257 RHFEL 1261


>11_04_0391 +
           17127309-17127449,17127886-17127950,17129209-17129305,
           17129729-17130193,17130505-17130528
          Length = 263

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 201 CGIPLLVFSKNCSVALLRHCMSPSLQGFRRASPSEATYLANTKTRNT 61
           CG+ L  +       L +H    S + F++A PS+     N K R T
Sbjct: 109 CGVKLKSYKSRQQHLLDKHQFPKSFEFFKKARPSQRQRNKNQKQRQT 155


>06_03_1473 -
           30382528-30382731,30382814-30382930,30383048-30383129,
           30383211-30383278,30383444-30383545,30383994-30384122,
           30384561-30384623,30384781-30384897,30385210-30386116,
           30386225-30386494,30386929-30386998,30387114-30387273
          Length = 762

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 137 DMQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNITGLKN 316
           D +CL    E  LE+ SKG  ++ I  +D   +      A  +A ++  F N N  G K+
Sbjct: 36  DQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNWN--GAKH 93

Query: 317 QQISD 331
           +   D
Sbjct: 94  KMEKD 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,126
Number of Sequences: 37544
Number of extensions: 345633
Number of successful extensions: 811
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)