Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L20
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    30   0.33 
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   7.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   9.4  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 286 VREAFVRSSRHATMYTHTRPILVNISHCDTARRSICIYPRLAR 158
           VRE FV+ +   T+Y   R +LV ++H D     I +  +LAR
Sbjct: 442 VRE-FVKETDTITLYKSMREVLVYLTHLDVVDTEIVMTEKLAR 483


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 204 QCEMFTRMGRVCVYIVACRDDRTNASRTETCILKYNLMYII 326
           +  +FT  GR+C  +    ++  +  R E CI K ++  +I
Sbjct: 609 ELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLI 649


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 269 SVVPTRDNVHTHTSHSSEHLALRHSKALYL 180
           S V T D  HT T HSS+H  L+  K+ +L
Sbjct: 36  SYVETDDVKHTDTHHSSKH-ELKKLKSHFL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,168
Number of Sequences: 5004
Number of extensions: 48244
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)