Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L20
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 369 KLFIYMYLNTKNKTLLYTSNYILIYKFLFARRSF 268
           K +IY   +   KTL +  + +L +++L AR  F
Sbjct: 44  KAYIYTIKSNMAKTLQFDVHMMLQFRYLDARLKF 77


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 165 NRGYIQIERLAVSQCEMFTRMGRVCVYIVACRDDRTNASRTETCILK 305
           N+ Y +   LA + C++     R   Y+ AC  +      T TCI +
Sbjct: 354 NKLYEETYALAPAGCDLTIDNLRKAKYLRACITESLRLIPTTTCIAR 400


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 360 IYMYLNTKNKTLLYTSNYIL 301
           I  Y+  + KTL YT N IL
Sbjct: 223 ITFYIIIRRKTLFYTVNLIL 242


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 644 IRHFFFKLPRA*ITFILS*LTSFPKLISRF 555
           + HF+F L      F+LS   +FP++   F
Sbjct: 228 LNHFYFMLNHNYPPFMLSNSLNFPQIRGEF 257


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 644 IRHFFFKLPRA*ITFILS*LTSFPKLISRF 555
           + HF+F L      F+LS   +FP++   F
Sbjct: 228 LNHFYFMLNHNYPPFMLSNSLNFPQIRGEF 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,371
Number of Sequences: 438
Number of extensions: 3517
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)