Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L13
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   1.3  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   1.8  
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    27   1.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.3  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    27   3.1  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   7.2  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.5  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -1

Query: 158 LDFV---GSWLLYYYNWSAK-SLCNQIYHFQYSKIFIKKPSPKVN 36
           +DFV   G+W+ Y++  SAK   CN   H Q +K+    P P  N
Sbjct: 517 VDFVQKFGAWITYHHRRSAKHPSCNCFSHLQ-TKLIDSGPKPANN 560


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 216 CTDWILDLRFL-IEII*GLVIDSIVYSER 299
           C +W+L+ RFL +E +  ++ D+I Y ER
Sbjct: 56  CIEWLLETRFLGMETVNKMLDDAIQYLER 84


>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 161 NVDIEEEESDEVTPRTNVLHRLDSRPSIPNRNNIGLGDRLNSVFREIRPLVENARM 328
           + +I + +   +TP T    + D +PS  + N   +G   N VF +I+   E +++
Sbjct: 6   SANISDADKSAITPTTGDTSQQDVKPSTEHINLKVVGQDNNEVFFKIKKTTEFSKL 61


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 170 IEEEESDEVTPRTNVLHRLDSRPSIPNRNNIGLGDRLNSVFREIRPLVEN 319
           +EEE   E T ++ V   +D   SIP ++N      +N    E    +E+
Sbjct: 25  VEEEPDSESTIKSRVSDEIDEHDSIPEQSNTEKSIEINDKNLEAEKDIES 74


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 107 ILHSSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDS 232
           +LH+  +  + +  + QV VD ++EE DEV    +     DS
Sbjct: 233 VLHAIIDKIIQIDVEIQVEVDDDDEEEDEVVTDDDGTSNADS 274


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 300 YDRWLKMLEWEIMPDYHYQHG 362
           Y RW+  ++WE       QHG
Sbjct: 290 YSRWMNWIKWEQSDPLDLQHG 310


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 83  NDRFDCTVILHSSYNSKVTMTQQNQVNVDIEEEES 187
           +D F+ T  + S+ NSK++  Q+N V   I E  S
Sbjct: 672 DDHFEVTEEITSTINSKISEKQENNVAETILEVTS 706


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 188 DEVTPRTNVLHRLDSRPSIPNRNNIGLGDRLNSVFREIRPLVENARMGNNARLSLPTWLP 367
           D +TP   V+        + +RN   L    +S+F  +R ++E+       +L  P   P
Sbjct: 512 DSITPPVFVIDHSKGVIYVSDRNGNSLTLEEDSLFSTLRIILEHPNSSRLQKLRAPGLCP 571

Query: 368 RNPP 379
              P
Sbjct: 572 NGSP 575


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 242 IPNRNNIGLGDR--LNSVFREIRPLVENARMGNNAR 343
           + NR  + LG R  L   F+E+ PLV + +M  N +
Sbjct: 632 LQNRGIMALGARRKLLKSFQEVAPLVSSKKMNENLK 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,971
Number of Sequences: 5004
Number of extensions: 52321
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)