Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_L13
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1608 - 38612754-38616947,38617030-38617095 33 0.20
12_02_1085 - 25935688-25935948,25936589-25936657,25937244-259373... 31 0.60
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 31 0.60
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 31 1.1
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 29 4.2
01_06_0877 + 32662978-32663179,32663718-32663951,32664080-326641... 28 5.6
06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781 28 7.4
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706... 28 7.4
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616 27 9.8
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 27 9.8
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 27 9.8
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591... 27 9.8
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 399 SIIWWVPGGFLGSHVGNDNLALFPILAFSTSGRISLN-TLLSRSPSPILFLLGIEG 235
+++ WVPG +GS +G+ P + SGR T +S SP + G+EG
Sbjct: 1252 ALLGWVPGSDVGSSLGSGGDMSQPRFIHNESGRFECRFTSVSIGTSPAIMFKGMEG 1307
>12_02_1085 -
25935688-25935948,25936589-25936657,25937244-25937315,
25937693-25937791,25937927-25938007,25938099-25938586,
25938728-25938857,25939994-25940239
Length = 481
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 110 LHSSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRPSIPNRNNIG-LGDRLNS 286
L S+Y T++N + + +EES ++T R+ V+ + D P ++ G + ++ +S
Sbjct: 310 LQSAYEVLSDFTKKNTYDDQLRKEESRKMTQRSRVVSQQDCSDFHPAKDGDGWVENKFSS 369
Query: 287 VFREI 301
F+EI
Sbjct: 370 SFKEI 374
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 399 SIIWWVPGGFLGSHVGNDNLALFPILAFSTSGRISLN-TLLSRSPSPILFLLGIEG 235
+++ WVPG +G +G+ P + SGR T +S SP + G+EG
Sbjct: 1248 ALLGWVPGSDVGGSLGSGGDMSQPRFIHNESGRFECRFTSVSIGASPAIMFKGMEG 1303
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +2
Query: 110 LHSSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRPSIPNRNNIGLGDRLNSV 289
LHSS T ++N ++ EE + TP T+ + + IP NN R S
Sbjct: 184 LHSSEQLMETEKEKNNAIINTNREEQNGATPSTSSPTPVTAPDPIPTTNNSQSQPR-GSG 242
Query: 290 FREIRPLVENARMGNNARLSLPTWLPR 370
E +P A+ GN+ LP W+ R
Sbjct: 243 ESEAQP--SPAQAGNS---KLPPWMLR 264
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 140 MTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRPSIPNRNNIGLGDRL----NSVFREIRP 307
+T +N +VD+ E+ P + ++ R ++ ++ D+L NSV + ++
Sbjct: 229 VTTENGTSVDVPPGETS--APEAAISNKKSVRDAVTPLAHMSYNDQLEHKKNSVAQILKR 286
Query: 308 LVENARMGNNARLSLPTWL 364
L NAR + LP W+
Sbjct: 287 LTRNARKACPTGIPLPDWV 305
>01_06_0877 +
32662978-32663179,32663718-32663951,32664080-32664143,
32664250-32664379,32664483-32664624,32664806-32665063,
32665168-32665252,32665609-32665711,32666281-32666406,
32666476-32666589,32666769-32666887,32666993-32667080,
32667154-32667246,32667325-32667414,32667522-32667641,
32667782-32667877
Length = 687
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 605 QDLLTH*SLHFLVLALTSWNH--LMHLHSMRDLLIVISV 495
QD + S+H LVL W H LMH S+ L++VI +
Sbjct: 437 QDSTFNASVHKLVLPSVPWYHERLMHQTSLGSLMVVILI 475
>06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781
Length = 389
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 404 GLRRPQSSIAHVNLGPNAQTFIVTDRGTSPAQRSQST 514
G RP ++ A VN P TF+V + + + ST
Sbjct: 128 GTERPAAAAAGVNAAPGIMTFLVASSANNASWETNST 164
>04_04_1033 -
30269639-30269734,30269838-30270257,30270450-30270662,
30271071-30271949
Length = 535
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 272 DRLNSVFREIRPLVENARMGNNAR 343
D LN +E++ LVE R GNN R
Sbjct: 379 DELNRTVKELKILVEQKRHGNNRR 402
>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
Length = 695
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +2
Query: 176 EEESDEVTPRTNVLHRLDSRPSIPNRNNIGLGDRLNSVFREIRPLVENARMGNNARLSLP 355
EE+S+ + + H + N N + D LN +IR +G +A+ S+
Sbjct: 370 EEDSENARQKQSFNHTDMVFSGLGNSNRAYMPDHLNKN-PDIRSESNTIAVGQHAQSSVF 428
Query: 356 TWLPRNPPGTHQII 397
+ L R PP HQ I
Sbjct: 429 SRLSRIPPPLHQEI 442
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 10 HFKCHSC-QKLTFGLGFLINILEYWK 84
HFKCH C +KL+ G I++L+ K
Sbjct: 34 HFKCHVCHKKLSTAGGMAIHVLQVHK 59
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 103 CAIKSIISNIPKYLLKNRARRSISDNCDI*NVLP 2
C +K ++ K LLK ++R ++ CDI N LP
Sbjct: 872 CYLKDTNNHSTKGLLKGGSKRRVTPWCDISNPLP 905
>04_04_0671 -
27157692-27158620,27158711-27158828,27158967-27159156,
27159281-27159415,27159537-27159634,27160034-27160206,
27160299-27160772,27161464-27161518
Length = 723
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 416 AYAVQLLLSGGYLVDFLVAMLVMIIWHYF 330
A AV L+ + +D LV+ +WH F
Sbjct: 648 AMAVPFLVGASFAIDMCAGSLVVFLWHRF 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,729
Number of Sequences: 37544
Number of extensions: 321984
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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