Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_L13
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 29 2.2
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 29 2.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 29 2.9
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 29 2.9
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 29 2.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 29 2.9
Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical pr... 29 3.8
U61948-3|AAB03145.1| 335|Caenorhabditis elegans Hypothetical pr... 29 3.8
L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily as... 29 3.8
L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily ass... 29 3.8
Z70270-8|CAA94229.2| 358|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.6
U58738-3|AAQ81272.1| 349|Caenorhabditis elegans Apex-related ge... 28 6.6
U58738-2|AAQ81271.1| 357|Caenorhabditis elegans Apex-related ge... 28 6.6
U50143-1|AAB02199.1| 349|Caenorhabditis elegans ARG-1 protein. 28 6.6
AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy pro... 28 6.6
AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical ... 28 6.6
U40956-4|AAA81759.1| 262|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 339 ALFPILAFSTSGRISLNTLLSRSPSPILFLLGIE 238
ALF ILAFS N LL P+ ++F+ IE
Sbjct: 53 ALFAILAFSDQAHFFANALLVAIPALLIFVFPIE 86
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 393 IWWVPGGFLGSHVGNDNLALFPILAFSTSGRISLNTLLSR-SPSPILFL 250
+W P F HVGN LALF L+F + + L SR P ++F+
Sbjct: 1074 VWTNPRNFNFDHVGNAMLALFETLSFK-GWNVIRDILWSRHGPWAVVFI 1121
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 393 IWWVPGGFLGSHVGNDNLALFPILAFSTSGRISLNTLLSR-SPSPILFL 250
+W P F HVGN LALF L+F + + L SR P ++F+
Sbjct: 1108 VWTNPRNFNFDHVGNAMLALFETLSFK-GWNVIRDILWSRHGPWAVVFI 1155
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 393 IWWVPGGFLGSHVGNDNLALFPILAFSTSGRISLNTLLSR-SPSPILFL 250
+W P F HVGN LALF L+F + + L SR P ++F+
Sbjct: 1166 VWTNPRNFNFDHVGNAMLALFETLSFK-GWNVIRDILWSRHGPWAVVFI 1213
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 393 IWWVPGGFLGSHVGNDNLALFPILAFSTSGRISLNTLLSR-SPSPILFL 250
+W P F HVGN LALF L+F + + L SR P ++F+
Sbjct: 1219 VWTNPRNFNFDHVGNAMLALFETLSFK-GWNVIRDILWSRHGPWAVVFI 1266
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 393 IWWVPGGFLGSHVGNDNLALFPILAFSTSGRISLNTLLSR-SPSPILFL 250
+W P F HVGN LALF L+F + + L SR P ++F+
Sbjct: 1138 VWTNPRNFNFDHVGNAMLALFETLSFK-GWNVIRDILWSRHGPWAVVFI 1185
>Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical
protein F37D6.2c protein.
Length = 584
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 248 NRNNIGLGDRLNSVFREIRPLVENARMGN---NARLSLP-TWLPRNPPGTHQIIEVGLRR 415
N + IG+ RL+ V+ + +P + N+R SLP T + +NP Q+ GL+R
Sbjct: 50 NFDQIGIR-RLSDVYNKNQPAFRGNEIPTGIRNSRPSLPATAILQNPQFLVQLAAKGLKR 108
Query: 416 PQSSI 430
P SS+
Sbjct: 109 PFSSV 113
>Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical
protein F37D6.2b protein.
Length = 581
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 248 NRNNIGLGDRLNSVFREIRPLVENARMGN---NARLSLP-TWLPRNPPGTHQIIEVGLRR 415
N + IG+ RL+ V+ + +P + N+R SLP T + +NP Q+ GL+R
Sbjct: 49 NFDQIGIR-RLSDVYNKNQPAFRGNEIPTGIRNSRPSLPATAILQNPQFLVQLAAKGLKR 107
Query: 416 PQSSI 430
P SS+
Sbjct: 108 PFSSV 112
>Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical
protein F37D6.2a protein.
Length = 582
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 248 NRNNIGLGDRLNSVFREIRPLVENARMGN---NARLSLP-TWLPRNPPGTHQIIEVGLRR 415
N + IG+ RL+ V+ + +P + N+R SLP T + +NP Q+ GL+R
Sbjct: 50 NFDQIGIR-RLSDVYNKNQPAFRGNEIPTGIRNSRPSLPATAILQNPQFLVQLAAKGLKR 108
Query: 416 PQSSI 430
P SS+
Sbjct: 109 PFSSV 113
>U61948-3|AAB03145.1| 335|Caenorhabditis elegans Hypothetical
protein C46A5.5 protein.
Length = 335
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 83 NDRFDCTVILHSSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSR 235
+DR S N K++ TQQ ++ + EE ++D VTP + H L R
Sbjct: 31 DDRISVDEDFSSPINIKLSETQQMIIDEEPEEIDADVVTPNFSNDHFLQPR 81
>L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform a protein.
Length = 507
Score = 28.7 bits (61), Expect = 3.8
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Frame = +2
Query: 65 IFW----NIGNDRFDCTV---ILHSSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHR 223
+FW NI D +D V L + N K ++ + +D E +SD NVL++
Sbjct: 199 VFWFTDSNIPEDVYDFIVTRAFLDAGCNRKAI--EKGWIALD-ELAKSDSGRQYLNVLYK 255
Query: 224 LDSRPSIPNRNNIGLGDRLNSVFREIRPLVENARMGNNARLSLPTW 361
LD + + N+++IG + E +V N + SLP W
Sbjct: 256 LDPKSKLENKDDIGFLKQYIRESMEAMAMV-NYPYPTSFLSSLPAW 300
>L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform b protein.
Length = 568
Score = 28.7 bits (61), Expect = 3.8
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Frame = +2
Query: 65 IFW----NIGNDRFDCTV---ILHSSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHR 223
+FW NI D +D V L + N K ++ + +D E +SD NVL++
Sbjct: 260 VFWFTDSNIPEDVYDFIVTRAFLDAGCNRKAI--EKGWIALD-ELAKSDSGRQYLNVLYK 316
Query: 224 LDSRPSIPNRNNIGLGDRLNSVFREIRPLVENARMGNNARLSLPTW 361
LD + + N+++IG + E +V N + SLP W
Sbjct: 317 LDPKSKLENKDDIGFLKQYIRESMEAMAMV-NYPYPTSFLSSLPAW 361
>Z70270-8|CAA94229.2| 358|Caenorhabditis elegans Hypothetical
protein C53D6.7 protein.
Length = 358
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +2
Query: 89 RFDCTVILHSSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLD 229
R++C +++ ++N + + NV+++EEE+ ++ R L R+D
Sbjct: 94 RYNCQILIFCNWNEGFIVNLTSGPNVELDEEETGQLDDRLLAL-RVD 139
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 137 TMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRPSIP 247
T T+ N+D+EE E DE + + L +P+ P
Sbjct: 2026 TTTEAKVENIDVEESEDDEEEDGEDFVAHLQMKPNKP 2062
>U58738-3|AAQ81272.1| 349|Caenorhabditis elegans Apex-related genes
protein 1, isoformb protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 448 TKCSDLYCD*QR--NFSSTEITINKSRIECKCIK*F 549
T S ++C +R T +++N++ ++CKCI+ F
Sbjct: 222 TPVSKVHCTLERVCKHGGTCVSVNRTNVQCKCIRGF 257
>U58738-2|AAQ81271.1| 357|Caenorhabditis elegans Apex-related genes
protein 1, isoforma protein.
Length = 357
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 448 TKCSDLYCD*QR--NFSSTEITINKSRIECKCIK*F 549
T S ++C +R T +++N++ ++CKCI+ F
Sbjct: 209 TPVSKVHCTLERVCKHGGTCVSVNRTNVQCKCIRGF 244
>U50143-1|AAB02199.1| 349|Caenorhabditis elegans ARG-1 protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 448 TKCSDLYCD*QR--NFSSTEITINKSRIECKCIK*F 549
T S ++C +R T +++N++ ++CKCI+ F
Sbjct: 222 TPVSKVHCTLERVCKHGGTCVSVNRTNVQCKCIRGF 257
>AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy protein
9 protein.
Length = 947
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 113 HSSYNSKVTMTQQNQVNVDIEEEESDEVTP 202
H + V TQ Q+N + EEEE ++ TP
Sbjct: 912 HQQRSRLVPNTQHRQINEEEEEEEEEDNTP 941
>AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical
protein T22H9.2a protein.
Length = 880
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 113 HSSYNSKVTMTQQNQVNVDIEEEESDEVTP 202
H + V TQ Q+N + EEEE ++ TP
Sbjct: 845 HQQRSRLVPNTQHRQINEEEEEEEEEDNTP 874
>U40956-4|AAA81759.1| 262|Caenorhabditis elegans Hypothetical
protein ZK402.1 protein.
Length = 262
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 92 FDCTVILH--SSYNSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRPSIPNR 253
FD +L+ S+YN + +Q+ + ++ EE+++ T N+ ++D PSIP R
Sbjct: 78 FDFEELLNRDSTYNLLIDHSQEYK---EVMMEENNQPTIYGNIPRKVDKGPSIPRR 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,027,494
Number of Sequences: 27780
Number of extensions: 290980
Number of successful extensions: 781
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -