Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L13
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   1.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 184 FFFLDIDVNLILLGHGYFTIITGVQNHCAIKSIISNIPKYL 62
           FFF++   N++   + ++      Q   A++SII+NIP +L
Sbjct: 15  FFFIEGMTNVLDFDYYFYDYSNRTQ---ALESIIANIPTWL 52


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 125 NSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRP 238
           NS V + Q  ++N  +EE+  +    ++ V H  ++RP
Sbjct: 90  NSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHDNARP 127


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 125 NSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRP 238
           NS V +    ++N  IEE+  +    +  V H  D+RP
Sbjct: 91  NSVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHDDARP 128


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 125 NSKVTMTQQNQVNVDIEEEESDEVTPRTNVLHRLDSRP 238
           NS V + Q  ++N  +EE+  +    +  V H  ++RP
Sbjct: 212 NSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHHDNARP 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,146
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)