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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L11
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    33   0.047
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    31   0.11 
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb...    29   0.44 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    29   0.44 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   0.58 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   0.58 
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    27   1.8  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   1.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   2.3  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   3.1  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   4.1  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   4.1  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   4.1  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   5.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.4  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   7.1  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.1  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   7.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   7.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.1  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.4  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   9.4  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.4  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   9.4  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   9.4  

>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 444 VAWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTD-EKSD--EDKMNVDEPVDSPEK 602
           V+  KK K    K+KQ KKK  T     D   +D EK +  E   N+D+ +D  EK
Sbjct: 90  VSTNKKAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKLEGLESSKNIDDDIDEIEK 145


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 459 KQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNVD 611
           +++L S K KQI    S+ +  N   + D  +DED++   + VD  + +++
Sbjct: 48  EKELESVKTKQISSSASSKVSSNTIQELDSTTDEDEIPGSDTVDEEDPSLN 98


>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 432 KLVDVAWKKKQKL-NSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNV 608
           K +D  + +++ L  SAK   +  KN+   PK D    + K D +  ++DE V   EKNV
Sbjct: 39  KEIDENYHRQESLIESAKIAYLNTKNTP--PKEDSMLPNLKKDSEDFDMDEFVKELEKNV 96


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 453 KKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPE 599
           KK +K+   K+K+ KKK+     K  ++ + +K ++ K  + +  D PE
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKI-KLKDKPE 237


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = +3

Query: 432 KLVDVAWKKKQKLNSAKRKQI----KKKNSTDLPKNDQNDT-----DEKSDEDKMNVDEP 584
           ++VD  + K  + N  +R+Q      KK   D+ +   N+T     D++ D D+   +E 
Sbjct: 316 RMVDFCFSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEI 375

Query: 585 VDSPEKNV 608
           V++ EKN+
Sbjct: 376 VNAREKNL 383


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = +3

Query: 432 KLVDVAWKKKQKLNSAKRKQI----KKKNSTDLPKNDQNDT-----DEKSDEDKMNVDEP 584
           ++VD  + K  + N  +R+Q      KK   D+ +   N+T     D++ D D+   +E 
Sbjct: 316 RMVDFCFSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEI 375

Query: 585 VDSPEKNV 608
           V++ EKN+
Sbjct: 376 VNAREKNL 383


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 456 KKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPV 587
           K QK  S   +Q+K+  +TD  KN++    E +++D    + P+
Sbjct: 125 KTQKSESPIPQQVKRDGTTD-AKNEETTKPENNEKDDFEEEPPL 167


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 459 KQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNVD 611
           K+K NS  R     +NS D   N   +T+E+ DE  M      +  E NV+
Sbjct: 582 KEKKNSKSRVVGNTENSKDEFNNPLFETEEQIDESWMENWNDEEETENNVE 632


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +3

Query: 435 LVDVAWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVD----SPEK 602
           L+DV  +++QK     + Q+ K+N   +    +   D K  E+K+  +E         E+
Sbjct: 57  LIDVPKEERQKRKQELKDQLLKENEGSISSKKKKRLD-KYIENKLKKEEVASLIAKLAEE 115

Query: 603 NVDMTILSNS 632
            +D ++LS+S
Sbjct: 116 RIDTSLLSSS 125


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +3

Query: 471 NSAKRKQIKKKNSTDLPKND-QNDTDE------KSDEDKMNVDEPVDSPEKNVDMTILSN 629
           NS   +     ++ D P ND + D  E      ++DED  + D+ VDS  KN +++I   
Sbjct: 80  NSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRR 139

Query: 630 ST 635
            T
Sbjct: 140 KT 141


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 462 QKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKN 605
           ++ +   +++  +KNST  P  D  + +  S   K  +D P+  PE N
Sbjct: 696 EETDDTSQEEDNEKNST--PDEDTENNNTSSISTKSIMDRPLTEPEPN 741


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 453 KKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVD 578
           K +   NS+  + +   N+T    N  +DT++ S ED   V+
Sbjct: 48  KVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGEDSYQVE 89


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +3

Query: 450 WKKKQKLNSAKRKQIKKKNST-DLPKNDQNDTDEKSDEDKMNVDEPVDSP-EKN--VDM- 614
           W      +    K  K  N+T ++  N+++D+D+  + DK+  +  V S  ++N  VD+ 
Sbjct: 82  WSFNASKSGKSNKDHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVGSSIDENELVDLD 141

Query: 615 TILSN 629
           T+L N
Sbjct: 142 TLLDN 146


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 232 SLKGRRACFSFFFD 191
           +LK +R CFSFFF+
Sbjct: 18  TLKNKRKCFSFFFE 31


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 432  KLVDVAWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDE 560
            K++DV  K+K+ LNS   KQ     STD  KN +   +   DE
Sbjct: 957  KMLDVVPKEKRDLNSFFPKQPLVVQSTD--KNKKEPQESLEDE 997


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 492 IKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDS 593
           +K K +   PKN +ND+  K++   +  + P  S
Sbjct: 602 VKAKKTRRAPKNSENDSATKTETANITSEAPTTS 635


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 501 KNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNV 608
           K  TD+  + +   DE  +E   + ++P+ S E+N+
Sbjct: 753 KAMTDMGSDSEQSADENDNESMASEEKPMFSDEENL 788


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 453 KKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDK---MNVDEPVDSPEKNVDMTIL 623
           K++ + N+ +  + K K  T+     + + + K + DK   +    P+ S E NVD +  
Sbjct: 674 KREAEENAKREAEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDTSKQ 733

Query: 624 SNST 635
           +N+T
Sbjct: 734 TNAT 737


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 471 NSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDK 566
           NS ++K+  K+N  + P+ D N  ++K  E+K
Sbjct: 87  NSNQQKKASKQNPQNSPETDANLQEKKIFEEK 118


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 501 FFLFAFFWHCSIFVFSSKQHQPI 433
           F +FAF + CS FVF   ++QPI
Sbjct: 426 FLVFAFLFDCSKFVF--LKYQPI 446


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 453 KKKQKLNSAKRKQIKKKN 506
           KKK+K N+ K+K+ K+KN
Sbjct: 438 KKKKKKNNKKKKKNKRKN 455


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 453  KKKQKLNSAKR--KQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEP 584
            KK+  L   K+  +Q + + ++ L +N   D  E   ED++  +EP
Sbjct: 1280 KKRLALEKQKKIMQQFRDQQASFLAQNTDFDIGEDQTEDEVTTEEP 1325


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/61 (21%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +3

Query: 441 DVAWKKKQKLNSAKRKQIKKKNSTDLPKN---DQNDTDEKSDEDK-MNVDEPVDSPEKNV 608
           +++ +++ + + A+  ++    ST  P++   DQ++  EK DE+K +  ++  +  E+ +
Sbjct: 359 EISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEKDDENKDVEEEQEQEQEEEQI 418

Query: 609 D 611
           D
Sbjct: 419 D 419


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 447 AWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDE 560
           A   K    S+KRK  +++ + + PK    + D++ D+
Sbjct: 154 ATASKNGAKSSKRKTTRRRRTPNRPKKSAEELDKEMDD 191


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 203  LFFRWSHISFIEGFVCFHFIKFIN 132
            + + + H+     F C HFI+F+N
Sbjct: 3072 IVWEFKHLGKTSYFSCLHFIRFLN 3095


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 453 KKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDK 566
           ++K+K    K KQ+K++   D  K  ++++D + +E K
Sbjct: 615 QEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDNEAK 652


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 506 ILFFYLLSFGTVQFLFFLPSNINQFNVRVYNFVIA*HFFRVFTFIVAYYDQL-LNIIFFR 330
           ++ F++L+     F+F   +   Q         I    F VFTFI  Y+  + LN +F R
Sbjct: 569 LILFFILNVAPTVFVFGFSTEEQQRTTGRLTVAIVHFIFSVFTFI--YFSLVPLNNLFHR 626

Query: 329 YF 324
            +
Sbjct: 627 AY 628


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 450 KQHQPI*RTGLQFCHRLTFFSSLYFHRRLL 361
           K H+P  R G    +  +F SSL FH  ++
Sbjct: 120 KLHRPASRAGAPLINAKSFISSLTFHDNIV 149


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 441 DVAWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKM 569
           D+  + KQK    K+     K S++L     ND+D   DED +
Sbjct: 155 DLIRRLKQKRFETKKNNFSVKESSNL---SNNDSDASLDEDTL 194


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 456 KKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNVDMTILSNST 635
           K  +LNS+ +  +K  +      +    + + SD   M V  P D PE  +D T  S   
Sbjct: 386 KTARLNSSPKSTLKTSSVKTRRSHSAQSSRKVSDYPNMVVITPADLPE-GIDTTQGSMEF 444

Query: 636 SRV 644
            R+
Sbjct: 445 DRI 447


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 513 DLPKN-DQNDTDEKSDEDKMNVDEPVDSPEKNVDMTILSN 629
           D  KN ++N  +EK DED   VDE   S E++V+M  + +
Sbjct: 31  DQDKNPEENVMNEKEDEDVDAVDE--KSGEEDVEMDTMED 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,070
Number of Sequences: 5004
Number of extensions: 37778
Number of successful extensions: 229
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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