Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L09
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    36   0.004
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.14 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   3.1  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   5.4  
SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyc...    25   5.4  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        24   9.5  

>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = +1

Query: 196 IYNKLIEIEMRIDRLLQEKHLQVQLLHQYNDIKDAAQIVINHVANMEGTTVKEIHDRLNL 375
           + + L +++ R  +   +KH  + LLH YN+I+D A  +I  VA  E  T  E+ DR  +
Sbjct: 24  LQDALAKLKNRDAKQTVQKH--IDLLHTYNEIRDIALGMIGKVAEHEKCTSVELFDRFGV 81


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +1

Query: 166 TIVMSKSNREIYNKLIEIEMRIDRLLQEKHLQVQLLHQYNDIK 294
           ++V+     E  N+L E+E +  +L +E+ + +QL++  ND++
Sbjct: 19  SLVLQNLKEETENQLKELEKKRSQLHKEEQINLQLVYAINDLR 61


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 166 TIVMSKSNREIYNKLI--EIEMRIDRLLQEKHLQVQLLHQYNDIK 294
           T+   ++  E  N L+  EIE R+ +L  EK   ++  H YND++
Sbjct: 184 TMQRKEAKVEEINTLLREEIEPRLTKLRTEKKTFLEYQHIYNDLE 228


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 357 YFFYSGTFHISY--MIDNYLCSVLNVIVL 277
           YF Y+  FH+SY  +I    C +L VI L
Sbjct: 92  YFGYASMFHLSYPTVILGKSCKLLPVIAL 120


>SPCC338.06c |||heat shock protein Hsp20 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 160 ILTIVMSKSNREIYNKLIEIE 222
           IL+IVM K N E   +++EI+
Sbjct: 119 ILSIVMKKKNPEFTTRIVEIQ 139


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 235 RLLQEKHLQVQLLHQYNDIKDAAQIVINHVAN 330
           R++Q KH    L H Y  I D    V   VA+
Sbjct: 14  RVIQAKHPPFPLFHSYFHIPDFLSFVFPFVAS 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,045
Number of Sequences: 5004
Number of extensions: 21182
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)