Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L09
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     29   1.7  
12_01_0194 + 1441406-1441726,1442416-1442559,1443172-1443666           27   7.1  
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770...    27   9.3  

>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +1

Query: 187 NREIYNKLIEIEMRIDRLLQEKHL 258
           NR++  +++ IE +IDRL++++H+
Sbjct: 120 NRDLVKQIMRIEGKIDRLIKDRHI 143


>12_01_0194 + 1441406-1441726,1442416-1442559,1443172-1443666
          Length = 319

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 256 LQVQLLHQYNDIKDAAQIVI 315
           L+VQL H YND++D   +VI
Sbjct: 275 LEVQLGHFYNDLEDTGVVVI 294


>05_03_0561 -
           15476484-15476649,15476814-15476893,15476971-15477030,
           15477117-15477210,15477287-15477421,15477601-15477656,
           15478359-15478460,15478544-15478651,15479206-15479283,
           15479432-15479521,15480061-15480123
          Length = 343

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 172 VMSKSNREIYNKLIEIEMRIDRLLQEKHLQVQLLHQYND 288
           V+S  N+EI  KL +I+ R+D  L  K L + +   + D
Sbjct: 71  VISPDNQEIGEKLSDIDGRLDYPLLNKELVLDVKRLWQD 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,405,954
Number of Sequences: 37544
Number of extensions: 104193
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)