Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_L08
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    61   1e-10
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   5.4  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   7.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   7.2  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   7.2  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   9.5  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   9.5  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   9.5  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
 Frame = +1

Query: 154 KNVILFVGDGMGPNTVTATRIY----KGGESHRLVYEKFPHVGLLKTYSANKMVPDSSCS 321
           K VI+ V DGMGP +++ TR +       E +RL  ++   +G  +T S++ ++ DS+  
Sbjct: 60  KFVIMMVSDGMGPGSLSMTRSFVETLNDKEGYRLPLDEHL-IGSSRTRSSSSLITDSAAG 118

Query: 322 ATALFCGVKANQETIGVDASVKHKDCSASLRPEARLKSLASIALKAGKSAGFVTTMRVTH 501
           ATA  C  K     +GV  +   K C   L  EA        A +AG   G V T RVT 
Sbjct: 119 ATAFSCANKTYNGAVGVLDN--EKPCGTIL--EA--------AKEAGYLTGIVVTSRVTD 166

Query: 502 ATPGPIYAHSADR 540
           ATP    AH+A+R
Sbjct: 167 ATPASFSAHAANR 179


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 474 FCDNYASHPCDPGSHLRPQC*S*MGMR 554
           FC  Y S PC PG   +PQ  S M  R
Sbjct: 500 FCQFYVSEPCKPGG--KPQLSSMMYQR 524


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 592 IARQLGGRLARKRLAGNPRW 651
           +   LG  +   +LAGNPRW
Sbjct: 310 VVSTLGASVISDKLAGNPRW 329


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 220  KGGESHRLVYEKFPHVGLLKTYSANKMVPDSSCSATAL 333
            K G  H+  Y KFP VG ++    +   PDS  +  AL
Sbjct: 1081 KPGNLHKSGYLKFPLVGKIEFDGVSFAYPDSERNHLAL 1118


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 415 PEARLKSLASIALKAGKSAGFVTTMRVTHATPGPIY 522
           PE +L+   S+ L + +++  ++   +TH  P PI+
Sbjct: 262 PEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIF 297


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 497 VTRIVVTKPALFPAFRAIEAKDFNLASGLN 408
           VT  VVT PA F   +    KD  L +GLN
Sbjct: 137 VTDAVVTVPAYFNDSQRQATKDAGLIAGLN 166


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 497 VTRIVVTKPALFPAFRAIEAKDFNLASGLN 408
           VT  VVT PA F   +    KD  L +GLN
Sbjct: 137 VTDAVVTVPAYFNDSQRQATKDAGLIAGLN 166


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -2

Query: 218 YILVAVTVLGPMPSPTKRITFFATP----RFHL 132
           ++L++ T+L  +P+P     +F  P    RFHL
Sbjct: 368 FLLISTTILTLVPAPLVEFRYFLLPFLFWRFHL 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,768
Number of Sequences: 5004
Number of extensions: 57010
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)