Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_L08
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 32 0.34
05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836... 29 3.2
08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890 29 4.2
11_01_0453 + 3512645-3514246 28 7.4
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 28 7.4
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 28 7.4
01_05_0804 + 25378929-25379036,25379209-25379526,25379914-25380546 28 7.4
12_02_0489 - 19619623-19619748,19619850-19620165,19620487-196207... 27 9.8
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757 27 9.8
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677... 27 9.8
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 32.3 bits (70), Expect = 0.34
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 274 LKTYSANKMVPDSSCSATALFCGVKANQETIGVDASVKHKDCSASL--RPEARLKSLASI 447
L+ KM+ + S ATA+ G K N E + A + KD ++ A LK
Sbjct: 278 LEEEETKKMIEEESIDATAIDSGEKENPEVAELKAKLMAKDMEVAILTADNAELKKQVGE 337
Query: 448 ALKAGKSA 471
A +A K A
Sbjct: 338 AAEAAKKA 345
>05_07_0128 +
27879969-27880143,27880232-27881323,27883562-27883698,
27884179-27884409,27884707-27884730
Length = 552
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 650 HLGLPASLFRASLPPSCLAISLQAAALAGILSSHSHLRSA 531
H G A+L RAS PPS + AAA A + HL +A
Sbjct: 140 HHGRAAALPRASAPPSTNIVLPSAAAAAPLTPPRRHLLAA 179
>08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890
Length = 468
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 302 TILLAEYVFNSPTCGNFS*TNL*LSPPLYILVAVTVLGPMPSPTKRITFFATPR 141
+++LA Y+ + GN + S L+I+ + +L P+ P K F ++PR
Sbjct: 126 SVVLAVYLVTTTVLGNAIKLSDATSYTLFIVTVLLLLAPLAIPVKMTLFRSSPR 179
>11_01_0453 + 3512645-3514246
Length = 533
Score = 27.9 bits (59), Expect = 7.4
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 1/132 (0%)
Frame = +1
Query: 139 NLGVAKNVILFVGDGMGPNTVTATRIYKGGESHRLVYEKFPHVGLLKTYSANKMVPDSSC 318
N+ V ++ VGDG+G +T +R +GG Y F S+ ++ C
Sbjct: 232 NVEVWTTNLMLVGDGIGRTVITGSRSVRGG------YTTFSSATFGTPRSSLSLLASCEC 285
Query: 319 SATALFCGVKANQETIGVDASVKHKDCSASLRPEARLKSLASIALKA-GKSAGFVTTMRV 495
L E + D V C + R A S ++AL+A G F
Sbjct: 286 ECVTLTW--MDVHEAVNADGFVA---CGVTFRNAAGAGSGQAVALRASGDRVAFYRCSFE 340
Query: 496 THATPGPIYAHS 531
H +YAH+
Sbjct: 341 GH--QDTLYAHT 350
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 352 NQETIGVDASVK--HKDCSASLRPEARLKSLASIALKAGKSAGFVTTMRVTH 501
NQET A +K ++ C+ L P LK +A L AGKS V ++ TH
Sbjct: 283 NQETTAAAALLKSSNQGCADILCP-VFLKDIARAILSAGKSFQLVQHVQETH 333
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 463 KSAGFVTTMRVTHATPGPIYAHSADRKWECED 558
KS F+ RV H P+Y+ +A WEC D
Sbjct: 366 KSKDFMQWTRVDH----PLYSSNASNMWECPD 393
>01_05_0804 + 25378929-25379036,25379209-25379526,25379914-25380546
Length = 352
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 169 FVGDGMGPNTVTATRIYKGGESHRLVYEKFPHVGL 273
F+ +GM P+ VTA + G E+H + ++ V L
Sbjct: 178 FISNGMPPSHVTALALLTGNEAHYSILKQVQFVHL 212
>12_02_0489 -
19619623-19619748,19619850-19620165,19620487-19620747,
19621320-19621710,19622242-19622254
Length = 368
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 522 VNGTRGRMGDSHSCHKTSTL-PSFQS 448
+N GR D+H CHK L P F S
Sbjct: 323 MNANGGRWSDAHFCHKIEQLFPGFMS 348
>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
Length = 817
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 426 PGFWPQRSRTILVLHTSVHSYGLLIGFDPTEQCRGG 319
P F+P+RS + L+ + H G GFDP + GG
Sbjct: 174 PAFFPERSGCRVTLYQNSHLSG---GFDPGVRLAGG 206
>05_02_0116 +
6773659-6774437,6775103-6775298,6775381-6775565,
6775746-6776079,6776174-6776378,6776692-6776834,
6777081-6777233
Length = 664
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 289 ANKMVPDSSCSATALFCGVKANQETIGVDASV 384
A+K+ SSCS +FCG ++N V A V
Sbjct: 350 ASKLDCSSSCSQDMMFCGFQSNSYLYYVHAQV 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,892,613
Number of Sequences: 37544
Number of extensions: 427308
Number of successful extensions: 1156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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