Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_L04
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 289 2e-79
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 285 3e-78
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 233 2e-62
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 224 1e-59
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 208 7e-55
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 200 1e-52
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 97 1e-21
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 90 2e-19
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 85 1e-17
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 83 4e-17
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 78 1e-15
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 77 2e-15
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 77 3e-15
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 76 4e-15
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 70 3e-13
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 69 6e-13
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 64 1e-11
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 60 2e-10
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 37 0.002
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 1.8
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 2.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 25 7.1
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.1
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 9.4
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.4
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 289 bits (709), Expect = 2e-79
Identities = 132/175 (75%), Positives = 151/175 (86%)
Frame = +3
Query: 117 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 296
R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ VELALWDTAGQE
Sbjct: 6 RRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQE 65
Query: 297 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 476
DYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC ++PI+LV K DLRND
Sbjct: 66 DYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRND 125
Query: 477 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 641
P I EL K Q PV +EG+A+A+KI A+ YLECSAK+ EGVREVFE+ATRAA+
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAM 180
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 285 bits (700), Expect = 3e-78
Identities = 128/175 (73%), Positives = 150/175 (85%)
Frame = +3
Query: 117 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 296
R+KLVIVGDGACGKTCLLIVFSK FPEVYVPTVFENYVAD+EVDG+ +ELALWDTAGQE
Sbjct: 6 RRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQE 65
Query: 297 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 476
DYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N+PI+LVG K DLRND
Sbjct: 66 DYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRND 125
Query: 477 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 641
P TI EL K Q+P+ +EG+ +A+KI A+ YLECSAK EGV EVFETA RA++
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASM 180
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 233 bits (570), Expect = 2e-62
Identities = 107/177 (60%), Positives = 133/177 (75%)
Frame = +3
Query: 117 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 296
R+KLV+VGDGACGKT LL VF+ FP YVPTVFENYV+D VDGK V+LALWDTAGQE
Sbjct: 8 RRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQE 67
Query: 297 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 476
+Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+ CPNVP ILVG K DLR+D
Sbjct: 68 EYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSD 127
Query: 477 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQV 647
P I E+R+ Q VK Q+ +A++I A Y+ECS+ + +GV +VFE ATRAAL V
Sbjct: 128 PVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAALTV 184
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 224 bits (547), Expect = 1e-59
Identities = 106/171 (61%), Positives = 126/171 (73%), Gaps = 2/171 (1%)
Frame = +3
Query: 120 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTAGQ 293
KKLV+VGDG CGKTCLLIVFS FPE YVPTVFENY+ DI + K +ELALWDTAGQ
Sbjct: 15 KKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQ 74
Query: 294 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 473
E+YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP PI+LVG K DLR
Sbjct: 75 EEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRK 134
Query: 474 DPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETA 626
D LR PV Q+ +++A +NA Y+ECSAK GV EVF+ A
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNA-PYVECSAKENTGVNEVFQLA 184
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 208 bits (507), Expect = 7e-55
Identities = 92/173 (53%), Positives = 124/173 (71%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 302
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 303 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPA 482
DRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++VG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPS 124
Query: 483 TINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 641
+L + Q P+ ++G +A ++ A Y+ECSA +++G++ VF+ A AAL
Sbjct: 125 VQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAIVAAL 177
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 200 bits (489), Expect = 1e-52
Identities = 99/174 (56%), Positives = 122/174 (70%)
Frame = +3
Query: 120 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 299
+K+VI+GDGA GKT LL VF+K FP+VY PT+FENY+ DI VDG +EL+LWDTAGQE+
Sbjct: 14 RKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 479
YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV CP V ++LV K DLR
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRG-- 131
Query: 480 ATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 641
+E + + + +EG A A+KINA YLECSAK GV E F A R AL
Sbjct: 132 --ADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVAL 183
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 265 STCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISRHVLPHAPSPTI-TNFLRD 113
S+CF S +G +G SLLN ++ P PTI N++ D
Sbjct: 2 SSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD 53
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 97.5 bits (232), Expect = 1e-21
Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 1/171 (0%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 299
KL+++GD GK+CLL+ FS+D F ++ T+ ++ + IE+DGK+++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 479
+ + Y IL+ + V S +N+ ++ +H NV IL+GNK D +
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCED-- 128
Query: 480 ATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATR 632
Q V ++G+A+A+++ +LE SAK+ V E F T R
Sbjct: 129 ----------QRQVSFEQGQALADELGV-KFLEASAKTNVNVDEAFFTLAR 168
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 90.2 bits (214), Expect = 2e-19
Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 2/172 (1%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 299
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + E++GK V+L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 476
+ + Y I++ + V DS N+ ++W E+ + V +LVGNK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNRLLVGNKSDM--- 125
Query: 477 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATR 632
+ ++ V+ + A+ +N +LE SAK V + F T +R
Sbjct: 126 ---------VDKKVVEYSVAKEFADSLN-IPFLETSAKDSTNVEQAFLTMSR 167
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 84.6 bits (200), Expect = 1e-17
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 5/179 (2%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 299
K+VI+GD GKTCL+ F +F Y T+ +++ D+ VD K V L LWDTAGQE
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN----VPIILVGNKKDL 467
+ L Y D ++ ++V++ S +++ E W E + P I+VGN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQDECAFPFIIVGNQIDK 128
Query: 468 RNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 644
++ R + + K + G M + E SAK V ++FET +R AL+
Sbjct: 129 DASKRAVSLHRAL--DYCKSKHGSNM-------IHFEASAKENTNVTDLFETVSRLALE 178
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 82.6 bits (195), Expect = 4e-17
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Frame = +3
Query: 120 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVD-GKQVELALWDTAGQ 293
+KLV++GD A GK+ L++ F KDQF + T+ ++ + +D V+L +WDTAGQ
Sbjct: 15 QKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQ 74
Query: 294 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 470
E Y L P+ Y + + ++ + + SLE + W E++ P + I L GNK DL
Sbjct: 75 ERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAPEGIVIALAGNKLDLA 133
Query: 471 NDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVF 617
+ + V+ + A A + N + E SAK+ E V E+F
Sbjct: 134 QE-----------RRAVEKADAEAYAAEAN-LLFFETSAKTAENVNELF 170
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 77.8 bits (183), Expect = 1e-15
Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 2/167 (1%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 299
KLV +G+ + GKT L+ F DQF Y T+ ++++ + ++ + V L LWDTAGQE
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 476
+ L P D+ V ++ + + + +S N EKW +V+ +V I+LVGNK DL
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDLA-- 129
Query: 477 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVF 617
+ R++ QE EG A+++ ++E SAK+ V+ +F
Sbjct: 130 -----DKRQVTQE-----EGEKKAKELK-IMHMETSAKAGHNVKLLF 165
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 77.0 bits (181), Expect = 2e-15
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 299
K++I+G+ GKT ++ + +F + Y T+ +++ ++ VD K V L LWDTAGQE
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKKD 464
+ L Y D ++ + V++ S E + + W E + P+ P IL+GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSFETL-DSWRDEFLIQASPSNPETFPFILLGNKVD 128
Query: 465 LRNDPATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 644
+ E ++M V + A + Y E SAK V+E FET + AL+
Sbjct: 129 -------VEEQKRM----VSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALE 177
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 76.6 bits (180), Expect = 3e-15
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 1/171 (0%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 302
KLV+VGDG GK+ L I + F + Y PT+ ++Y E+DG+ L + DTAGQE+Y
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69
Query: 303 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDP 479
+R + L+ +++ S S + I + ++ P++LV NK DL
Sbjct: 70 SAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLE--- 126
Query: 480 ATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFETATR 632
+ V EG +A+ ++ Y+E SAK + V E F + R
Sbjct: 127 ---------AERVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVR 167
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 76.2 bits (179), Expect = 4e-15
Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 299
K V++GD GK+ LL+ F++++F T+ + +I +D K+++ +WDTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 476
Y + Y L+ + + S +N+ +W E++ H N+ I+LVGNK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVIMLVGNKTDL--- 127
Query: 477 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFET 623
+ V +E +A A + N +++E SA V E F+T
Sbjct: 128 ---------LHLRAVSTEEAQAFAAE-NNLSFIETSAMDASNVEEAFQT 166
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 70.1 bits (164), Expect = 3e-13
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 299
KLV+VGDG GKT + +F + Y+ T+ E + + ++ +WDTAGQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 470
LR Y ++ F V S + +N+P W V+ C N+PI+L GNK D++
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNKVDVK 126
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 68.9 bits (161), Expect = 6e-13
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Frame = +3
Query: 120 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 299
+++ ++G + GK+ L + + ++ F E Y PT+ + +I+ G++ + DTAGQ++
Sbjct: 7 RRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDE 66
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 476
Y L ++ +S+ S S E + + H VPI++VGNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLH-- 124
Query: 477 PATINELRKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVREVFE 620
Q V +EG+A+A + A+ E SA+ E V FE
Sbjct: 125 ----------MQRAVTAEEGKALANEWKC-AWTEASARHNENVARAFE 161
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 64.5 bits (150), Expect = 1e-11
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDG-----KQVELALWDTA 287
K+V+ G GK+CLL F K+Q+ + TV ++ + I G K+++L +WDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 288 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKD 464
GQE + + Y ++ + V + DS E + W +++ P+ + ++L G+K D
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDIRAMAPSTICVVLAGSKSD 129
Query: 465 LRN 473
L+N
Sbjct: 130 LQN 132
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 299
K+ ++GD + GKT L++ + + F E T+ N++ I + ++ ++WD GQ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 464
+ + P+ D IL F + +L +I E W + + F IL+G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-WYRQARGFNKTAVPILIGTKYD 125
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 37.1 bits (82), Expect = 0.002
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +3
Query: 123 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ-VELALWDTAGQED 299
++VI GD GK+ L+ ++ +P VF D V L L DT Q D
Sbjct: 5 RVVICGDQGVGKSSLISALIQED-NVTSIPKVFPIISIPSNPDSNDDVSLVLVDT--QSD 61
Query: 300 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRN 473
+ L+ ++C S E + W P + NVPI+L NK +DL N
Sbjct: 62 SNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDLDN 120
Score = 34.3 bits (75), Expect = 0.015
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 4/155 (2%)
Frame = +3
Query: 81 ISQNLQ-DRWLRSRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGK 257
+SQN + ++ R+ +VG +CGKT LL F + + TV V +E
Sbjct: 408 VSQNRKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTV----VNSVEFQST 463
Query: 258 QVELALWDTAGQEDYDRL-RPLSYPDTDVILMCFSVDSPDSLENIPE--KWTPEVKHFCP 428
Q L L G+ D D L P S D++ + + +P+S I P+++
Sbjct: 464 QRYLVL-SEIGETDLDILAEPKSLEACDILCLLYDSSNPNSFSFIANLLNLYPDLQ---- 518
Query: 429 NVPIILVGNKKDLRNDPATINELRKMKQEPVKPQE 533
+P + K DL R+ ++ PV+P E
Sbjct: 519 KIPCVFAATKADLD---------RQQQRYPVQPDE 544
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = -1
Query: 286 AVSHRASSTCFPSTSMSAT*FSNTVGTYTSGN*SLLNTISR 164
A S+ ++S +PSTSMSA+ S + TS + S ++ SR
Sbjct: 500 ATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSR 540
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 284 GIPQSQFHLFSIHFDVGNVILKHCRHVYFRELILAEH 174
G QS+ +IH + +++H ++ YF++L+ +H
Sbjct: 325 GSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQH 361
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 210 PTVFENYVADIEVDGKQVELALWDTAGQ-EDYDRLRPLSYPDTDVILMCFSV 362
P +FE+ I+ G V+L LW AG+ E DR+ P + LM F +
Sbjct: 1162 PFIFEDVERAIDPSGTNVDL-LWRAAGKFELLDRILPKLFLTGHKTLMFFQM 1212
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +3
Query: 102 RWLRSRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV 209
R L +++ +++VGD CGKT + + ++ E+++
Sbjct: 1181 RCLLAKEPVLLVGDTGCGKTTVCQILAECLHKELHI 1216
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 129 VIVGDGACGKTCLL 170
++VGD A GKTC+L
Sbjct: 1873 ILVGDTATGKTCIL 1886
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 372 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 470
DS E + WTPE+ + V +I + +K +R
Sbjct: 367 DSKEQLLAYWTPEITNQPARVALISIPSKSTIR 399
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +3
Query: 486 INELRKMKQEPVKPQEGRAMAEKINAF 566
+++ +K K+ P KP+E + + +N+F
Sbjct: 388 VDDNKKKKKGPAKPKEKATLGKTVNSF 414
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 168 ADMFYRMHRHRRLLTFCVIAAIGP 97
+D+F + R LL FC A +GP
Sbjct: 223 SDLFNPIQRTGALLVFCAAAFVGP 246
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 9.4
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +1
Query: 196 RKYTCRQCLRITLPTSKWMENKWNWL 273
++++CRQ + + S WM+ +W+
Sbjct: 455 QRFSCRQLYGLAVQASMWMQIPCDWV 480
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 423 RSALPQGSTSLGCSRANPASPP 358
+SA Q TSLG + NP PP
Sbjct: 463 KSAENQPPTSLGINNGNPVMPP 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,547
Number of Sequences: 5004
Number of extensions: 57638
Number of successful extensions: 258
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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