Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_K20
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 87 3e-18
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 30 0.33
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 30 0.33
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 29 0.77
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 1.8
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 26 5.4
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 5.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 5.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 7.2
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 9.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 9.5
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 86.6 bits (205), Expect = 3e-18
Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Frame = +2
Query: 170 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK 349
M++ + L KAI LV A + D + Y +A + Y+ ++YF+ A+KYE + E++KE IR+K
Sbjct: 1 MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59
Query: 350 CLQYLDRA--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAI 523
++YLDRA L+ L AI
Sbjct: 60 VIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAI 119
Query: 524 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIP 649
+VEKP+V+W D+AG V+LPIK P LF+ R P
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKP 161
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 521 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIP 649
IVV V W D++G V+ P P LF G R P
Sbjct: 449 IVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLREP 491
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 521 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIP 649
I+ V WSD+AG VI P P LF G R P
Sbjct: 369 IISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLREP 411
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 536 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT 634
P V W D+ G + LP++FP LF+
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFS 682
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 524 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 631
VVE P+V+W D+ G V +P+ + F
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKF 523
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 224 EEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 367
E+ N E+ L+ +Y F VK+ A + + S++ C QYLD
Sbjct: 102 EQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQSCFQYLD 151
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 170 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQ 316
+TSS + KAI L TK+ + K N L + +E +K E +
Sbjct: 360 ITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVE 408
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 215 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 340
K +E K+K+ ++ +LYE + + +YE E KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 648 GILLPVNKCGNFIGR--ITASFNASLAASRPAT 556
G+LLP+NKC + R I A +++ AS T
Sbjct: 2184 GLLLPLNKCFQKVARDHIVACMQSAIQASGKVT 2216
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 464 HYHSSYHHFWIPHPLLVFSFDLF*DIPLIFQLYQDIEG-ILHECFLLPFHL 315
+++ + +W + + F F L IP++F L+ I G LH + HL
Sbjct: 302 YWNVGFLRYWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHL 352
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 389 IPLIFQLYQDIEGILHEC 336
IP LY D+ GILH C
Sbjct: 26 IPEFDNLYLDMNGILHNC 43
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 383 LIFQLYQDIEGILHECFLLPFHL 315
L+FQ YQ I + ++CF HL
Sbjct: 497 LLFQFYQSIMDLNNDCFTNTSHL 519
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 139 CTIIVVNLKNNDIIKYLTKSY 201
CT++ V+ KN+++I+ L SY
Sbjct: 227 CTVLYVSAKNHNLIEALPLSY 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,722
Number of Sequences: 5004
Number of extensions: 34308
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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