Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_K17
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    68   8e-13
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    29   0.60 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.1  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.8  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   5.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.6  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 68.1 bits (159), Expect = 8e-13
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = +2

Query: 275 MMRRLRRVNVDHFHVGWYQSADVGNFLSLSL-LESQYHYQTSIEESVVVIYDTKKSAXGF 451
           M+ RL+ +     HVGWY  A V +FLS    +E+QY YQ +   S+  +YD  +S+ G 
Sbjct: 91  MLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGT 150

Query: 452 LTLKAYRLTPQAIAMYKEGDYTPEALRN 535
           L ++AY+LTP+ +A ++E  +T  +L +
Sbjct: 151 LYMRAYQLTPEFMAAHEEKTWTASSLNS 178



 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 60  PENEAT-IQYVQCDGLAVMKIVKHCHEESCSNM 155
           PE E+  I+ V+ + L VM I+KHC  +S  NM
Sbjct: 10  PELESPPIERVELESLLVMNIIKHC-RDSFPNM 41


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +2

Query: 188 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFL 355
           + +NRLE  N F FP  D      +   EY   M R+L  +NV    VG  +S  + ++ 
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV----VGMTKSVLMSSYF 62

Query: 356 SLSLL 370
           +L L+
Sbjct: 63  NLMLV 67


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 277  HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 188
            +++ VFL IH ++  W+WE V  +  ++ D
Sbjct: 969  YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 398 IEESVVVIYDTKKSAXGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLXIGY 550
           + + +VV YD K  +  F  L+A   TP+      E   TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 206 EITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 304
           ++T  +  P H +  +  +++LD  R  RR+N+
Sbjct: 368 DLTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 515  CNRLPCT*Q*PEV---SNDRPSKSRILWLISL 429
            CN + C  Q   +   SN +P  +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,727
Number of Sequences: 5004
Number of extensions: 43724
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)