Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_K17
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 105 2e-23
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 3.3
10_01_0129 + 1535823-1537196 27 7.5
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 27 10.0
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 10.0
03_05_0219 - 22059388-22059729,22059838-22059999 27 10.0
02_05_0557 + 29946273-29946497,29946899-29947465,29947898-299479... 27 10.0
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 105 bits (253), Expect = 2e-23
Identities = 52/120 (43%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Frame = +2
Query: 203 LEITNCFPFPKHDDT----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLL 370
LE+TNCFPFP +D D YQL+MMR LR VNVD+ VGWYQS +G+F ++ L+
Sbjct: 70 LEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELI 129
Query: 371 ESQYHYQTSIEESVVVIYDTKKSAXGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLXIGY 550
E+ +YQ +I V ++YD +S G L LKA +LT + +Y+ T E LR + +
Sbjct: 130 ETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSW 189
Score = 33.5 bits (73), Expect = 0.11
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 63 ENEATIQYVQCDGLAVMKIVKHCHE 137
E + ++ VQ +GLAV+KI+KHC E
Sbjct: 27 EAPSPLRVVQMEGLAVLKIIKHCEE 51
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 317 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSAXGFLTLKAYR 472
VGWY+S + G + S +S +H ++ +++V D KSA G T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218
>10_01_0129 + 1535823-1537196
Length = 457
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 124 NTVMKNHAATWRWLRXALLGFGR*EPSGDYQLL 222
N + A RW ++G R EPSG+Y++L
Sbjct: 208 NPTTRQRAPISRWTIDNIVGLYRHEPSGEYRVL 240
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -1
Query: 325 PSNMKMINIDSSKPPHHVQLVFLLIHGVVMLWKWE 221
P++ +++ S KP + L ++L G + L +W+
Sbjct: 339 PASTSKLDVHSQKPNQSMTLAYVLFRGSMKLLQWD 373
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +1
Query: 280 EEASKSQC*SFSCWMVPECRCRQFSKPFVIRVTISLSDLY*GECCCDLRYKEISXRILDF 459
+E S++ SF C + E + +T +L + G C +L + I+ R++
Sbjct: 1892 KEMSRNVSESFYCLVCSEADALSDEHKSLASITYNLIE---GNKCGNLLVELIASRLILD 1948
Query: 460 EGLSFDTSGYCYVQGRRLHSG 522
L + SGYC+ H G
Sbjct: 1949 VHLQAEASGYCFESEPGSHDG 1969
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 395 RSDSDIVTLITKGLENCLHLHSG 327
R+ D+V L+ + LENC H ++G
Sbjct: 45 RAALDVVELVVRELENCPHYNAG 67
>02_05_0557 +
29946273-29946497,29946899-29947465,29947898-29947961,
29948400-29948480,29948604-29948818,29948936-29949106
Length = 440
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 359 GLENCLHLHSGTIQHENDQH*LFEASSSCPTG 264
G NC L G D H LF+ SSCP G
Sbjct: 8 GQRNCQQLGGGVFG--GDAHHLFDEISSCPRG 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,403
Number of Sequences: 37544
Number of extensions: 297913
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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