Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_K17
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 197 SQRPXPRRAXLSHLH 153
           S +P PRRA L+ LH
Sbjct: 416 SPKPFPRRATLAQLH 430


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 326 TIQHENDQH*LFEASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPXP 180
           +I +  D++      S  PT  P  P  + ALE  ++    D   +P P
Sbjct: 86  SITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDDGGQPRP 134


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 313 KMINIDSSKPPH 278
           K +N D S+PPH
Sbjct: 800 KSVNGDQSQPPH 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,881
Number of Sequences: 438
Number of extensions: 2718
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)