Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_K16
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 242 3e-65
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 78 1e-15
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 75 1e-14
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 66 4e-12
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 60 4e-10
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 60 4e-10
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 59 6e-10
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 58 1e-09
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 1e-09
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 57 2e-09
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 56 6e-09
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 55 1e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 53 4e-08
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 51 1e-07
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 50 3e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 47 3e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 46 4e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 6e-06
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 44 3e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 42 8e-05
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 40 2e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 2e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 40 3e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 0.001
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.001
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 38 0.002
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 37 0.003
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 36 0.007
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.007
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.015
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 34 0.020
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.062
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.11
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.58
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 29 0.77
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.3
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 1.3
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 1.3
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 1.8
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 2.3
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 27 2.3
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 2.3
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 27 3.1
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 3.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 3.1
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz... 27 3.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 4.1
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.1
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 5.4
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 5.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.2
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 7.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 9.5
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 242 bits (593), Expect = 3e-65
Identities = 113/212 (53%), Positives = 159/212 (75%), Gaps = 1/212 (0%)
Frame = +3
Query: 15 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 194
E+AN +IE VNGMLLN K VYVG + R+ER+ ++ FTNVY+KN + +++
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 195 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 374
D+F ++G ITS ++ + RGFGFV + + + A++A ELN KE +GK LYVGRAQ
Sbjct: 279 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEY-KGKKLYVGRAQ 337
Query: 375 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 554
KK ER++EL++++EQ+K E++ +YQGVNL++KNL D +DDERL+ EF+ FGTITSAK+M
Sbjct: 338 KKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT 397
Query: 555 -EDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 647
E G+SKGFGFVC+++PEEA KAVTEMN R++
Sbjct: 398 DEQGKSKGFGFVCYTTPEEANKAVTEMNQRML 429
Score = 103 bits (246), Expect = 3e-23
Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 10/151 (6%)
Frame = +3
Query: 15 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELG---EKAKLF-------TNVYVKNF 164
E A K+++++N GK +YVGR + ERE+EL E+ KL N+++KN
Sbjct: 312 ECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNL 371
Query: 165 GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 344
++ DE LK F +G ITS K+M + G S+GFGFV + P+ A +A E+N + ++
Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN-QRMLA 430
Query: 345 GKPLYVGRAQKKAERQKELKRKFEQLKSERL 437
GKPLYV AQ+K R+ +L+ + + RL
Sbjct: 431 GKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
Score = 101 bits (243), Expect = 7e-23
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 1/210 (0%)
Frame = +3
Query: 15 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 194
E K+++++N L+ G+ + + R +++G NV++KN ++ L
Sbjct: 132 EDGEKALDELNYTLIKGRPCRI-MWSQRDPSLRKMGTG-----NVFIKNLDPAIDNKALH 185
Query: 195 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 374
D F +G+I S KV + GN++G+GFV F+ ++A A +NG L+ K +YVG
Sbjct: 186 DTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM-LLNDKKVYVGHHV 244
Query: 375 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 554
+ ERQ K E LK+ N+Y+KNLD I ++ F FG ITS ++
Sbjct: 245 SRRERQS----KVEALKA------NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVK 294
Query: 555 -EDGRSKGFGFVCFSSPEEATKAVTEMNGR 641
++ + +GFGFV +++ E A KAV E+N +
Sbjct: 295 DQNDKPRGFGFVNYANHECAQKAVDELNDK 324
Score = 72.5 bits (170), Expect = 5e-14
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Frame = +3
Query: 144 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERACIE 320
++YV ++ ML ++F G + S +V S G+ +V F + + E+A E
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 321 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV-NLYVKNLDDTIDDE 497
LN L++G+P + +Q+ +K G N+++KNLD ID++
Sbjct: 141 LN-YTLIKGRPCRIMWSQRDPSLRK-----------------MGTGNVFIKNLDPAIDNK 182
Query: 498 RLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIV 647
L F+ FG I S KV +++ G +KG+GFV F S E A A+ +NG ++
Sbjct: 183 ALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLL 233
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 77.8 bits (183), Expect = 1e-15
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 2/182 (1%)
Frame = +3
Query: 99 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGF 275
+ER +L E+ + V+V + L D FE+ G + +++ K G S+G +
Sbjct: 226 RERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAY 285
Query: 276 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV 455
V F D+ + A I L+GK L+ G P+ V + + R+ + + S + ++
Sbjct: 286 VEFCHEDSVQ-AAIALSGKRLL-GLPVIVQLTEAEKNRKAREAAELARAASAEIPFHR-- 341
Query: 456 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 632
L V N+ + DE ++ F PFG I + +D RSKGFG++ + +P A A+ +M
Sbjct: 342 -LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 633 NG 638
NG
Sbjct: 401 NG 402
Score = 47.6 bits (108), Expect = 2e-06
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Frame = +3
Query: 96 RKEREK-ELGEKAKL---FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR 263
RK RE EL A F + V N + +DE +K +FE +G I + D S+
Sbjct: 321 RKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK 380
Query: 264 GFGFVAFEDPDAAERACIELNGKELV-EGKPLYVGRAQKKAERQKELKRKFEQ 419
GFG++ + +P +A A ++NG +L + +G + E + ++F++
Sbjct: 381 GFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDE 433
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 74.5 bits (175), Expect = 1e-14
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 3/170 (1%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIEL 323
V+V + D+ L FE+YG I +V M G S+G+G+V FE P+AA +A +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA-KAAVAA 323
Query: 324 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 503
NG + ++G+ + + + + + ++ ++L+ ++V NL ++ L
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSE-PSDTVFVGNLSFNATEDDL 382
Query: 504 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 647
F G I S ++ + GR KGFG+V FS + A K V EMNG +
Sbjct: 383 STAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFI 431
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 66.1 bits (154), Expect = 4e-12
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 3/170 (1%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR-GFGFVAFEDPDAAERACIEL 323
+Y+ N E +D +L ++ + G + + + NS GFGF F E AC L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 324 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 503
N +L GKP+ V RA + + G NL+V NLD +D+ L
Sbjct: 73 NQVKLF-GKPIRVNRASQ----------------DRGVNTLIGANLFVGNLDPLVDERVL 115
Query: 504 RKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 647
F+ G + A + D GRSKG+GFV + S E A A+ MN + +
Sbjct: 116 YDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFL 165
Score = 45.6 bits (103), Expect = 6e-06
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Frame = +3
Query: 12 EEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 191
E+ + + +N + L GK + V R ++ G + N++V N + +L
Sbjct: 62 EQDVEYACQILNQVKLFGKPIRVNR------ASQDRGVNTLIGANLFVGNLDPLVDERVL 115
Query: 192 KDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 368
D F G++ + +D+ G S+G+GFV+++ + A+ A IE + + KP+ V
Sbjct: 116 YDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETAD-AAIEAMNNQFLMNKPITVSY 174
Query: 369 AQK---KAERQKELKRK 410
A K K ER ++ +
Sbjct: 175 AFKREGKGERHGDIAER 191
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 59.7 bits (138), Expect = 4e-10
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Frame = +3
Query: 141 TNVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERA 311
+N+YVKN + L+D+F +G I S + Y + G S+G+GFVAF +AA RA
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 312 CIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQGVNLYVK 470
LNG +V K ++V A++K++R + L+ F + SE+ + L+VK
Sbjct: 442 KDTLNGM-MVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALFVK 494
Score = 57.6 bits (133), Expect = 1e-09
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +3
Query: 456 NLYVKNLDDTIDD--ERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 623
NLYVKNLDDT+ +L F+PFG+I S+ + G SKG+GFV F E A +A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 624 TEMNGRIVG 650
+NG +VG
Sbjct: 443 DTLNGMMVG 451
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITS 539
+YV N+D + DE + K F+ +G + S
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVES 45
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Frame = +3
Query: 141 TNVYVKNFGEDFSDEMLKDMFEKYGRITS--HKVM-----------YKDDGNSRGFGFVA 281
+ +YV N SDE + F KYG++ S +++ +K N +GFV
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVK 76
Query: 282 FEDPDAAERACIELNGKELVEGK 350
F + ++ E + G L + K
Sbjct: 77 FVNAESIEEVLKDAKGMTLGQRK 99
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 59.7 bits (138), Expect = 4e-10
Identities = 44/174 (25%), Positives = 83/174 (47%)
Frame = +3
Query: 105 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAF 284
R E+ + + TN+YV NF + + + +F YG + + +R F +V
Sbjct: 654 RGHEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQM 713
Query: 285 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLY 464
PD A A ++L+ K L E P+ V + L+R +S + Y+G LY
Sbjct: 714 RKPDEAHNA-LQLHKKLLEEKYPIQVFISDP-------LRRT---PRSGAV--YEGRELY 760
Query: 465 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 626
V N+D ++++ + F +G + S ++ + KGFG+V ++ ++A A++
Sbjct: 761 VTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALS 814
Score = 41.9 bits (94), Expect = 8e-05
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 326
+YV N +++ ++ F YG++ S ++ K +GFG+V AE A +
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIP-KRFNQHKGFGYVVMTTNQDAENA-LSAA 816
Query: 327 GKEL-------VEGKPLY-VGRAQKKAERQKELKRKFEQLKSERLT-------RYQGVNL 461
GK+L V KP + + + + + L + FE +S +++ + + +L
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 462 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR 641
V N+D T+++ RLR F +G + +V+L +G V F +A KA + G
Sbjct: 877 GVTNVDGTVNEARLRSLFESYGKL--YRVVLHP-EHEG-AVVEFLDIHDAGKASLALEGH 932
Query: 642 IVG 650
+G
Sbjct: 933 EIG 935
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.8 bits (136), Expect = 6e-10
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Frame = +3
Query: 57 LNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV 236
L+GK++ R IPR+E+EK AK+F V D ++E ++ F ++GR+ +
Sbjct: 227 LDGKIIDPKRAIPREEQEKT----AKMF----VGGVPGDCTEEEFRNFFNQFGRVLDATL 278
Query: 237 MY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 413
M KD G RGFGFV +E+ A E + + GKP+ V RA KA + R
Sbjct: 279 MMDKDTGRPRGFGFVTYENESAVEATMSQ--PYITIHGKPVEVKRATPKASLRDSHDRHQ 336
Query: 414 EQLKSERLTRY-QGVNLY 464
Y Q +N+Y
Sbjct: 337 HGYHGNANPYYAQNMNMY 354
Score = 55.6 bits (128), Expect = 6e-09
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIEL 323
+++ + +D+ L+D FE++G + VM G SRGFGF+ F++P +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV---M 221
Query: 324 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 503
+ + ++GK + RA + E++K K ++V + +E
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAK------------------MFVGGVPGDCTEEEF 263
Query: 504 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKA 620
R F FG + A +M+ + GR +GFGFV + + E A +A
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEA 303
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE- 629
+++ L+ D+ LR F FG + VM + GRS+GFGF+ F +P+ + +++
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 630 --MNGRIV 647
++G+I+
Sbjct: 225 HHLDGKII 232
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 58.0 bits (134), Expect = 1e-09
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = +3
Query: 144 NVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERAC 314
N++VKN ++ + + L+++F K+GRI S + Y S+G+GFV+F P A +A
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 315 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 419
LNG L K L+V A+K+ +R+K L F Q
Sbjct: 480 NTLNG-VLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +3
Query: 456 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 623
NL+VKNLDD I + ++L + F+ FG I S + SKG+GFV FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 624 TEMNGRIVG 650
+NG + G
Sbjct: 480 NTLNGVLFG 488
Score = 37.5 bits (83), Expect = 0.002
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Frame = +3
Query: 99 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG---- 266
K EK K ++YV N L ++FE +G + ++ + S
Sbjct: 6 KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 267 --FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL----KS 428
F F+ FE+ +A+ A LNG +G L V + +L+ +Q+
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSF-QGNTLKVEYTHIVERYKNKLENGVDQIHHSNNE 124
Query: 429 ERLTRYQGVNLYVKNLDDTIDDERL 503
+ R+ + Y K T+ + R+
Sbjct: 125 KAKIRFSKIEKYTKETRPTVSEVRV 149
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +3
Query: 423 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGT------ITSAKVMLEDGRSKG-FG 581
K++R T+ +++YV NL T L + F PFG ++ K D +S F
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFA 69
Query: 582 FVCFSSPEEATKAVTEMNG 638
F+ F + A A+ +NG
Sbjct: 70 FITFENKCSADNAIASLNG 88
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.0 bits (134), Expect = 1e-09
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 326
++V N G D +DE L F +Y + KV+ +G +RGFGFV+F+D D +A E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 327 GKELVEGKPLYVGRA 371
GK + +P+ + RA
Sbjct: 92 GK-YIGSRPVKLSRA 105
Score = 52.4 bits (120), Expect = 5e-08
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 635
L+V NL + ++DE L + F+ + ++ KV+ + +G+++GFGFV F ++ KA E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 636 GRIVG 650
G+ +G
Sbjct: 92 GKYIG 96
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 57.2 bits (132), Expect = 2e-09
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
Frame = +3
Query: 141 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 317
+ ++V+N + L + F G I V+ + G +RG+GFV F + A+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 318 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI-DD 494
EL K+L G+ L + A + ++ E+ + + + + L ++NL +I
Sbjct: 65 ELKNKKL-HGRILRLDFATPR--KRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKP 121
Query: 495 ERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNG 638
+ L F+ FG + K+ + GR GF FV + A +A+ +NG
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNG 170
Score = 47.6 bits (108), Expect = 2e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Frame = +3
Query: 15 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGE-KAKLFT-------NVYVKNFGE 170
E A ++ +++ L+G+++ + PRK E + + KA T + ++N
Sbjct: 57 EDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPW 116
Query: 171 DFSD-EMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEG 347
+ L+ F K+G++ K+ K G GF FV +D AAE A LNG E ++G
Sbjct: 117 SIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTE-IDG 175
Query: 348 KPLYVGRAQKK 380
+P+ V A K
Sbjct: 176 RPIAVDWAVSK 186
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 447 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATK 617
+G+ + ++ +D K G + AKV E GRSKGFGF+ F S + A
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFISHKYALM 554
Query: 618 AVTEMNGR 641
A+ +NGR
Sbjct: 555 ALRWLNGR 562
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 252 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 350
G S+GFGF+ F A A LNG+E+ K
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREITVKK 568
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 55.6 bits (128), Expect = 6e-09
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 2/152 (1%)
Frame = +3
Query: 189 LKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 368
LKD+F + G + + +G SRG G V A A L+ + + G+ L V R
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM-GRTLEV-R 256
Query: 369 AQKKAERQKELKRKFEQLKSERLTRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTITSAK 545
+ A K E L + +YV NL D L F G++ A+
Sbjct: 257 LDRFAHH------KIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRAR 310
Query: 546 VMLED-GRSKGFGFVCFSSPEEATKAVTEMNG 638
+ E GRSKGFG V F + +A ++ ++NG
Sbjct: 311 IAYEPTGRSKGFGVVQFENENDAASSIEKLNG 342
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 326
+YV N SD L D+F G + ++ Y+ G S+GFG V FE+ + A + +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 327 GKELVEGKPLYVGRA 371
G G+PL + A
Sbjct: 342 GYR-YGGRPLQLSYA 355
Score = 32.7 bits (71), Expect = 0.047
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 19/193 (9%)
Frame = +3
Query: 102 EREKELGEKAKLFTN---VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFG 272
ER+ LG K VYV N LK+ + G + + +++ +G S+G
Sbjct: 50 ERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCA 109
Query: 273 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 452
+ + + A A L+ ++ + G+ +Y+ R ++ + S
Sbjct: 110 IIEYSTAEEARTAIKTLSNQKFM-GRLVYI-REDREQNARFGSSSVSPSASSNGKDSEPD 167
Query: 453 VNLYVKNLDD---------------TIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGF 584
L+V N+ + + L+ F G++ A + M ++GRS+G G
Sbjct: 168 RQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGI 227
Query: 585 VCFSSPEEATKAV 623
V SS +EA A+
Sbjct: 228 VVMSSMKEAMHAI 240
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV-TEM 632
+YV NL + L++ G + + +++ L +G SKG + +S+ EEA A+ T
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 633 NGRIVG 650
N + +G
Sbjct: 128 NQKFMG 133
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 54.8 bits (126), Expect = 1e-08
Identities = 49/169 (28%), Positives = 76/169 (44%)
Frame = +3
Query: 141 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 320
T ++V + E + D F+ YG+I K+M GFGFV ED A +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM-------NGFGFVEVEDARDARDIVND 56
Query: 321 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 500
GKE + G + V A+ + R++E R+ K R R G L V+NL + + +
Sbjct: 57 FQGKEFM-GSRIVVEPARGE-RRRRENFRESAASKYPR-PRRTGFRLIVENLSEDVSWQD 113
Query: 501 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 647
L+ G T E + G G V FS+ E+ A+T +NG ++
Sbjct: 114 LKDVMRKAGEPTFTDAHRE---NPGAGVVEFSTEEDMRNALTSLNGEVI 159
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +3
Query: 450 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 623
G +L+V + + ++ L++ F+ FGT+T ++M E S+GFGF+ FS+ EEAT A+
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
Query: 624 TEMNGR 641
+N +
Sbjct: 160 DNLNSQ 165
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +3
Query: 90 IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRG 266
+ +KE + L +++V ++ L+ +F K+G +T ++M + SRG
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 267 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 377
FGF++F + A A LN +E G+ L V +A++
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQEFY-GRVLNVQKAKR 179
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 51.2 bits (117), Expect = 1e-07
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 12/176 (6%)
Frame = +3
Query: 132 KLFTNVYVKNFGE---DFSDEMLKDMF-EKYGRITSHKVMYKDDG-NSRGFGFVAFEDPD 296
++ T+ +V+ E + S+E +K + E+ RI H M K+ ++GF +V F D
Sbjct: 119 EILTDFFVRETSEMIKEVSEENIKPITTEQITRI--HMPMSKEKRFQNKGFAYVDFATED 176
Query: 297 AAERA--CIE--LNGKE-LVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 461
A + A C E LNG+ L++ + GR K A K ++S + + L
Sbjct: 177 ALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLS----KTASIQSSK--KEPSSIL 230
Query: 462 YVKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRSKGFGFVCFSSPEEATKAV 623
+V NLD D L++ F G I ++M ED G+ KGFGFV F + KA+
Sbjct: 231 FVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 50.0 bits (114), Expect = 3e-07
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Frame = +3
Query: 210 YGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 386
Y TS K++ G SR +GFV F + A + + G L +G+PL + A K+
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGY-LCQGRPLRISVASPKSR 264
Query: 387 RQKELKRKFEQLKSERLTRYQGVNL----------YVKNLDDTIDDERLRKEFAPFGTIT 536
+ + R +L +V L + ++ L+ F PFG I
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 537 SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 650
+ K+ KG GFV +S A KA+ M G +VG
Sbjct: 325 NIKIPF----GKGCGFVQYSEKSAAEKAINTMQGALVG 358
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +3
Query: 99 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFV 278
++ ++L L T V+V + S++ L+ F+ +GRI + K+ + +G GFV
Sbjct: 283 RQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF-----GKGCGFV 337
Query: 279 AFEDPDAAERACIELNG 329
+ + AAE+A + G
Sbjct: 338 QYSEKSAAEKAINTMQG 354
Score = 35.1 bits (77), Expect = 0.009
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +3
Query: 456 NLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 626
+++V +L T +D L F + + TSAK++++ G S+ +GFV FSS +E A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 627 EMNG 638
M G
Sbjct: 243 HMQG 246
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 46.8 bits (106), Expect = 3e-06
Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Frame = +3
Query: 105 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYKDDGN-SRGFGFV 278
REK + + ++ +++V + + ++ + +F +Y S K+M N SRG+GFV
Sbjct: 176 REKSISKASEY--SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFV 233
Query: 279 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV- 455
F D + + A E+ G ++ +P+ VG A K++ + + Y
Sbjct: 234 RFTDENDQKSALAEMQG-QICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQ 292
Query: 456 -----------NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSP 602
++V L + +E L+ F FG I K+ KG GFV F +
Sbjct: 293 PVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI----PPGKGCGFVQFVNR 348
Query: 603 EEATKAVTEMNGRIVG 650
+ A A+ ++ G +G
Sbjct: 349 QSAEIAINQLQGYPLG 364
Score = 39.1 bits (87), Expect = 5e-04
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Frame = +3
Query: 177 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 353
++ ++ ++ G+ K++ + G + G+ FV F P A A + +N K +
Sbjct: 105 TEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MSMNNKPIPGTNH 163
Query: 354 LY-VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FG 527
L+ + A R+K + + E +++V +L +++ + FA +
Sbjct: 164 LFKLNWASGGGLREKSISKASEY------------SIFVGDLSPNVNEFDVYSLFASRYN 211
Query: 528 TITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIVG 650
+ SAK+M + S+G+GFV F+ + A+ EM G+I G
Sbjct: 212 SCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICG 254
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.4 bits (105), Expect = 4e-06
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 8/176 (4%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN------SRGFGFVAFEDPDAAER 308
+YVKN E + +F+ S + K D S GFGFV F+D +A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 309 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 488
A +NG +++G L + + + + E+++ + ++ +G + +KNL
Sbjct: 681 AMHAMNG-FVLDGHKLEIKLSHQGVDAAAEVRK-------QDSSKPKGTKILIKNLPFEA 732
Query: 489 DDERLRKEFAPFGTITSAKVMLEDGRS-KGFGFVCFSSPEEATKAVTEM-NGRIVG 650
+ ++ +G + S +V + RS +GF F F + EA A+ + N ++G
Sbjct: 733 TKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLG 788
Score = 45.2 bits (102), Expect = 8e-06
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +3
Query: 90 IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRG 266
+ +ER +L + K ++++N +++ LK +F +G++ H + K N +G
Sbjct: 309 VSEQERNIQLISETK---RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKG 365
Query: 267 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 383
F ++ F D D A RA +EL+ K +G+ L+V A+ ++
Sbjct: 366 FAYIDFHDADDAVRAYLELDAKPF-QGRLLHVLPAKARS 403
Score = 37.9 bits (84), Expect = 0.001
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 18/183 (9%)
Frame = +3
Query: 153 VKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAA--ERACIELN 326
VKNF S E L +F +G + +++ G F+ D A + A +
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELG--RILIPPAGTIAIIEFLNAPDCRQAFSKLAYTRIK 567
Query: 327 GKEL-VEGKPLYVGRAQKKAERQKELKRKF--------EQLKSERLTRYQGVNLYVKNLD 479
L +E P V K + EL +K E++ +E + +YVKNL+
Sbjct: 568 SSILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTSEKVGTEDIESLDTATIYVKNLN 627
Query: 480 DTIDDERLRKEFAPFGTITSAKVMLE-----DGR--SKGFGFVCFSSPEEATKAVTEMNG 638
+ E +K F P SA + + G+ S GFGFV F A A+ MNG
Sbjct: 628 FSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNG 687
Query: 639 RIV 647
++
Sbjct: 688 FVL 690
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 632
L+++NL + ++ L+ F PFG + + ++ KGF ++ F ++A +A E+
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 633 NGR 641
+ +
Sbjct: 385 DAK 387
Score = 35.1 bits (77), Expect = 0.009
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 5/165 (3%)
Frame = +3
Query: 6 KLEEAANKSIEKVNGMLLNG-----KMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGE 170
K + +A ++ +NG +L+G K+ + G + R+++ K K T + +KN
Sbjct: 673 KDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQD-SSKPK-GTKILIKNLPF 730
Query: 171 DFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 350
+ + + ++ + YG++ S +V K D ++RGF F F A A L L+ G+
Sbjct: 731 EATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLL-GR 789
Query: 351 PLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDT 485
L + A +++ E++ E ++ K L +T
Sbjct: 790 HLVLQYASNAT--MDDMQHAIEKMAKEANAEAAAPSITGKRLIET 832
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPF----GTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 623
+ +KN+ D E+L IT V ++G S+ F F+ F + E+A KA+
Sbjct: 4 IIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADKAI 63
Query: 624 TEMN 635
+N
Sbjct: 64 RYLN 67
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 45.6 bits (103), Expect = 6e-06
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Frame = +3
Query: 300 AERACIELNGKELVEGKPLYV---GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 470
+++ ++ KEL+E K A K Q++L + E L++++ + ++YV
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVG 60
Query: 471 NLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 644
N+D ++ E L+ FA G++ ++ + G KGF ++ FS P A+ +NG +
Sbjct: 61 NVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-LNGSM 119
Query: 645 V 647
+
Sbjct: 120 L 120
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 43.6 bits (98), Expect = 3e-05
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 21/185 (11%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 323
+Y+ N + ++ + ++ + +G + S +++ DG+S+GF F F++P AE A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 324 NGKELVEGKPLY-----VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL---D 479
+GK+ G L+ VG Q ++ + E K+ + V L + NL D
Sbjct: 372 DGKD-TYGNKLHAQFACVGLNQAMIDKSNGMAILTELAKASSQSIPTRV-LQLHNLITGD 429
Query: 480 DTID-------DERLRKEFAPFGTITSAKVMLEDG-RSKGFG----FVCFSSPEEATKAV 623
+ +D E ++ +F+ +G + K+ G R+ G G FV +S A A+
Sbjct: 430 EIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAM 489
Query: 624 TEMNG 638
EM G
Sbjct: 490 EEMKG 494
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 632
+Y+ NL + ++++ + PFG + S +++ + DG SKGF F F +P +A A++ +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 633 NGR 641
+G+
Sbjct: 372 DGK 374
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.9 bits (94), Expect = 8e-05
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +3
Query: 465 VKNLDDTIDDERLR---KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 635
+K + D + R R + P+ I K+ E R +GFGFV F++ E+ ++A+ EMN
Sbjct: 221 LKEMFDAYNPTRARIAVRSLPPY-IIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMN 279
Query: 636 GRIVG 650
G+ VG
Sbjct: 280 GKQVG 284
Score = 37.5 bits (83), Expect = 0.002
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Frame = +3
Query: 144 NVYVKNFGEDFSDEMLKDMFEKY----GRITSHKV---------MYKDDGNSRGFGFVAF 284
++YV ++E LK+MF+ Y RI + + + RGFGFV+F
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 285 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 416
+ + RA E+NGK+ V L V A + ++Q + K E
Sbjct: 266 ANAEDQSRAIEEMNGKQ-VGDLTLVVKSAVFREDKQNDENEKNE 308
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS------KGFGFVCFSSPEEATKA 620
++V L + +R F GT+ + R G FV F++ E+ KA
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 621 VTEMNGR 641
+ +NG+
Sbjct: 106 IETLNGK 112
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 40.3 bits (90), Expect = 2e-04
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +3
Query: 141 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 317
T + VKN + L D F++ G + Y D+G RG F F P+ A+
Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQ 261
Query: 318 ELNGKELVEGKPLYV--GRAQKKAERQKELKRKFEQLKSER 434
LNG E + G+ L V R AER+K K K Q + R
Sbjct: 262 TLNGYE-INGRRLRVEWKRQLPAAEREKVEKAKKRQAEERR 301
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 632
+ VKN+ +++ + L F G + ++G +G F F PEEA V +
Sbjct: 204 IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQTL 263
Query: 633 NG 638
NG
Sbjct: 264 NG 265
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIEL 323
VYV N + ++E + D+F++ G + S + V+ + G +G+GF + DP A A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 324 N 326
N
Sbjct: 67 N 67
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 39.9 bits (89), Expect = 3e-04
Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 1/183 (0%)
Frame = +3
Query: 102 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFV 278
+ +K E NVY++ + SDE L ++G+++S K + + N +G+GF
Sbjct: 283 DNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFA 342
Query: 279 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 458
FE+ +A CI A Q ++ + + L + N
Sbjct: 343 CFEEEKSA-LICIS----------------AMTLCGYQCSFAKESFSARLQSLQDTESTN 385
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 638
LY+ NL ++ + F P I++ + +S+G GF + A + + N
Sbjct: 386 LYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFNN 445
Query: 639 RIV 647
++
Sbjct: 446 FVL 448
Score = 35.9 bits (79), Expect = 0.005
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Frame = +3
Query: 141 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 320
TN+Y+ N +++ + +F K +I S++V+ SRG GF +D AE +
Sbjct: 384 TNLYISNLPLHWNESDISTLF-KPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINK 442
Query: 321 LNGKELVEG-KPLYVGRA----QKKAERQKELKRKFEQLKSERLTRYQGVN 458
N L PL + A QKK + Q + +R + + LT+ N
Sbjct: 443 FNNFVLDPALPPLQIRFADSTDQKKFKGQTQKRRLWRAREYSVLTKGMTAN 493
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 326
+++KN + E + D+F +YG + ++ + +RG FV +E+ A RAC +L+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV--RQIRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 327 GKELVE 344
G ++
Sbjct: 72 GYNFMD 77
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 441 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 614
R L V NL D +E LR F FG I + E GR+KGF FV + + A
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAI 257
Query: 615 KAVTEMNG 638
KA ++G
Sbjct: 258 KARDRLDG 265
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 37.5 bits (83), Expect = 0.002
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Frame = +3
Query: 141 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 317
T + +KN E+L +F + Y D+G RG F F P+ A+
Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291
Query: 318 ELNGKEL------VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 461
LNG E+ VE K +++ ER K+ KR E+ K++ + + N+
Sbjct: 292 VLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRAVEERKNQLKSPFSVANI 345
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTIT--SAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 632
+ +KN+ ++ E L K F + ++G +G F F SPEEA V +
Sbjct: 234 IVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQVL 293
Query: 633 NG 638
NG
Sbjct: 294 NG 295
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 456 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 623
N+Y+ N DD++ ERL+++F FG I R K FV F+S A A+
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTSLASAINAI 466
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 144 NVYVKNFGEDFSDEMLKDMFEKYGRI 221
N+Y+ N + + E LK+ FE++G I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.5 bits (78), Expect = 0.007
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 326
+YV F + L FE +G + + SR F FV +ED AE A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 327 GKELVEG 347
G+ L G
Sbjct: 69 GRRLERG 75
Score = 33.9 bits (74), Expect = 0.020
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 635
LYV D + L EF PFG + + + R S+ F FV + +A A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 636 GR 641
GR
Sbjct: 69 GR 70
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +3
Query: 150 YVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNG 329
+V N D ++ L D F + G + V+ SRGFG+V FE D A + L+G
Sbjct: 97 HVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADTLS-AALALSG 154
Query: 330 KELVEGKPLYVGRAQKKAERQKE 398
++L+ G+P+ + A+ + +E
Sbjct: 155 EDLM-GRPVRITVAEPRRSFARE 176
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 147 VYVKNFGEDFSDEMLKDMFEKYGR-ITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 323
+Y+ N D +++ + +F ++G + + V K+ G S+GF F+ +ED + A +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 324 NGKELVE 344
+L++
Sbjct: 93 TNVKLLD 99
Score = 32.7 bits (71), Expect = 0.047
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 632
+Y+ NLD ++++ + F+ FG ++ E G+SKGF F+ + AV M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 33.9 bits (74), Expect = 0.020
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 558 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV 647
+GRSKG + FS P +AT+A + GR+V
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLV 121
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.3 bits (70), Expect = 0.062
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 447 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 620
+G + V + +E++ FA FG + + + L+ G KG+ + +++ E+A KA
Sbjct: 8 EGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67
Query: 621 VTEMN 635
V E N
Sbjct: 68 VDEKN 72
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 31.5 bits (68), Expect = 0.11
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Frame = +3
Query: 231 KVMYKDDGNSRGF---GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKEL 401
KV Y +DG S + FE DAA A + + L+ G P+ + E QK
Sbjct: 15 KVNYYEDGESGAILKTCCIEFESQDAARNALERQSTQRLISGNPISL---DVVPEWQKP- 70
Query: 402 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG 581
+ Y L++ N+D + + ++ F + I++ + DG S
Sbjct: 71 ------------SYYM---LFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIA 115
Query: 582 FVCFSSPEEATKAVTEMNG 638
F+ ++ + A EM G
Sbjct: 116 FIWLANESDIQNAQVEMQG 134
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 186 MLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 311
+L D+F KYG++ K++++ F F+ F+ AA A
Sbjct: 381 LLVDLFSKYGKVIDCKIIHQ--SKKPAFAFLRFDSQQAAYAA 420
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.77
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 54 LLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY-GRITSH 230
+LNG +YV F+P K R L + L +V GE+ + K M Y G++ S
Sbjct: 313 ILNGNPIYVYSFVPHKIRLTHLVDAPLLGMSVCPLYPGEENPFKRFKIMLTVYTGKVISV 372
Query: 231 KVMYKDD 251
+V ++
Sbjct: 373 EVQLSEN 379
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 144 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 311
NVY + + + E L+ + +YG I S K + +R GFVA+ + A +A
Sbjct: 501 NVYFSHISDSLTTEELELILRQYGEIESIKYL-----KNRSSGFVAYTNISNAMKA 551
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 144 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK 245
NV++ N + ++ +++ F K+G+I K++ K
Sbjct: 300 NVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK 333
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 384 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 491
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 396 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLED 560
E + F+Q E ++ +NLY + DD D+E + + PF + S K ++ D
Sbjct: 186 EERAAFKQQIREEFVKHD-INLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVD 243
Query: 561 GR 566
GR
Sbjct: 244 GR 245
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = +3
Query: 78 VGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI---TSHKVMYKD 248
VG+ IP + ++ E AK+ T+ Y G D S + + E RI T K +Y +
Sbjct: 308 VGK-IPSELTSQDFKELAKM-TDGYS---GSDISIVVRDAIMEPVRRIHTATHFKEVYDN 362
Query: 249 DGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 350
N + DPDA E + +E+N ++++E K
Sbjct: 363 KSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPK 396
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +3
Query: 258 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV---GRAQKKAERQKEL---KRKFEQ 419
S G F FE+ D A+ EL+GK++++ V + +K E +R+F++
Sbjct: 90 SLGLVFADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEEREFKE 149
Query: 420 LKSER--LTRYQGVNLYVKNLDDTIDDERLRKEFAP 521
+ R LT Y G + ++ + + RK P
Sbjct: 150 REHLRSWLTDYYGRDQFISYYGNRVSVNWNRKSDVP 185
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 93 PRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 197
P E EK++ +KAKL N + G+ ++ +D
Sbjct: 625 PSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD 659
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 207 KYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLY--VGRAQKK 380
KY + ++ KV + D+GN+ F + ED L L E + K+
Sbjct: 589 KYKK-SADKVYFDDEGNAIPFYAMNTEDTFQKAGDPAALIASHLAEERKALEKADITDKE 647
Query: 381 AERQKELKRKFEQLKSERLTR 443
RQK+L++K + + ER+T+
Sbjct: 648 TVRQKQLEKKRRRQELERITQ 668
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 3.1
Identities = 24/90 (26%), Positives = 36/90 (40%)
Frame = +3
Query: 231 KVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 410
K Y D+ R F+ + E+A +G + G PL K ER K+ K+K
Sbjct: 83 KRRYADEYYDRTDPFIDDAELYIEEKAAATKDGFFVFSG-PLVAEGDTVKIERSKKTKKK 141
Query: 411 FEQLKSERLTRYQGVNLYVKNLDDTIDDER 500
+ S V+ V + D + DD R
Sbjct: 142 KKTSLSNATHPAPAVSAVVASADASFDDSR 171
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +3
Query: 216 RITSHKVMYKDDGNSRG-FGFVAFEDP-DAAERACIELNGKELVEGKPLYVG---RAQKK 380
+IT+ KDD +GF F D +AER +EL E + +P Y+ + KK
Sbjct: 49 QITAASDASKDDNYDASIYGFDEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKK 108
Query: 381 AERQKELKRKFEQLKSERL 437
+R L R+ LK L
Sbjct: 109 RKRDLLLARERALLKKNEL 127
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 315 IELNGKELVEG--KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 488
++L +LVE K L+V + K E ++ K+ E LKS R +N Y+ L + I
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLK-ENSEKFKQNSESLKS----RVDNLNDYITKLQNEI 392
Query: 489 DDER 500
D+ R
Sbjct: 393 DECR 396
>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 75 YVGRFIPRKEREKELGEKAKLFTNVYVKNF 164
YV F+PR KEL + Y+ NF
Sbjct: 187 YVAAFLPRNTDVKELAAYGSIHNKPYITNF 216
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 408 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE--FAPFGTIT 536
KF Q+ T VN + NLD I+D + + + F P TIT
Sbjct: 418 KFAQVSDMCSTEIPWVNFFCDNLDICIEDVQFKSKAFFPPTVTIT 462
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 459 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEE 608
+YV L +I+ L F+ FG++++ +++ + G + F ++ F + E+
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDED 59
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 141 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR---GFGFVAFEDPDA 299
T V +KN F+ +ML+D + + T + + D ++ G+ F+ F +P +
Sbjct: 597 TTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYAFINFIEPQS 652
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 21 ANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTN 146
A +S + V ++NG PR ++ ELG K +F N
Sbjct: 518 AVESGDVVKATIVNGPAAPYAEDRPRHKKNPELGNKKSIFAN 559
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 343 STSSLPFNSMQALSAASGSSKATKPKPLELP--SSLYITL*LVMRPYFSNISFNISSEKS 170
S+SS+P S + S +S SS ++ P SS +IT + + S ++ SS S
Sbjct: 204 SSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT-MSSSTFISTVTVTPSSSSS 262
Query: 169 S 167
S
Sbjct: 263 S 263
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +3
Query: 186 MLKDMFEKYGRITSHKVM---YKDDGNSRGFGFVAFED 290
MLK EK TS K+ Y+ S G GF+A ED
Sbjct: 1 MLKWAIEKDNYTTSEKIGLNDYRHVHESLGIGFIALED 38
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +3
Query: 3 LKLEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSD 182
LK+ E + + K NG L N + + + ++E L +K ++ K+F ++ D
Sbjct: 89 LKVAEEKIEKLLKENGTLKNEEKCLRMQIVAQEEYVAPLIQKLEIIEKKLDKSFRKNMED 148
Query: 183 EM 188
E+
Sbjct: 149 EL 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,454
Number of Sequences: 5004
Number of extensions: 47530
Number of successful extensions: 292
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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