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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_K12
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    76   4e-15
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    41   2e-04
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    40   3e-04
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    39   7e-04
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    33   0.036
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    33   0.047
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    32   0.062
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    32   0.062
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    32   0.083
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    30   0.33 
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    29   0.58 
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    29   0.77 
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    29   0.77 
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   1.8  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   2.3  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   3.1  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   3.1  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    27   3.1  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    26   4.1  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   7.2  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   7.2  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   7.2  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.2  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.5  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   9.5  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   9.5  

>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 35/90 (38%), Positives = 56/90 (62%)
 Frame = +1

Query: 382 TFTVHADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDV 561
           +F ++  +++K+ +LG+G YG+V K  H P+   MA+K I  +    +  Q  ++M+LD+
Sbjct: 312 SFRINMSEIIKLEELGKGNYGVVYKALHQPTGVTMALKEIRLSLEEATFNQ--IIMELDI 369

Query: 562 SMRASACPYTVHFYGAMFREGDVWICMEVM 651
            +  +  PY V FYGA F EG V+ICME M
Sbjct: 370 -LHKAVSPYIVDFYGAFFVEGSVFICMEYM 398


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 28/76 (36%), Positives = 39/76 (51%)
 Frame = +1

Query: 424 LGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMRASACPYTVHFY 603
           LG G  G V  ++H   N  MA K  T    + S  QK++L +L V +     PY V FY
Sbjct: 72  LGEGNGGAVSLVKH--RNIFMARK--TVYVGSDSKLQKQILRELGV-LHHCRSPYIVGFY 126

Query: 604 GAMFREGDVWICMEVM 651
           GA   + ++ +CME M
Sbjct: 127 GAFQYKNNISLCMEYM 142


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 24/68 (35%), Positives = 35/68 (51%)
 Frame = +1

Query: 424 LGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMRASACPYTVHFY 603
           LG G  G V K R   +  I A+K + A  N     QK+LL +L ++ R+   PY V +Y
Sbjct: 85  LGEGVSGSVRKCRIRGTQMIFAMKTVLAAPNTAL--QKQLLRELKIN-RSCTSPYIVKYY 141

Query: 604 GAMFREGD 627
           GA +   +
Sbjct: 142 GACYNNAE 149


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 22/85 (25%), Positives = 42/85 (49%)
 Frame = +1

Query: 391 VHADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMR 570
           V  D L  +  +G GAYG+V K   +   T+ AVK +     N+  ++K    +L +  R
Sbjct: 13  VLGDSLRFVSIIGAGAYGVVYKAEDIYDGTLYAVKALCKDGLNEK-QKKLQARELALHAR 71

Query: 571 ASACPYTVHFYGAMFREGDVWICME 645
            S+ PY +  +  +  E  +++ ++
Sbjct: 72  VSSHPYIITLHRVLETEDAIYVVLQ 96


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 20/76 (26%), Positives = 40/76 (52%)
 Frame = +1

Query: 424 LGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMRASACPYTVHFY 603
           +G+GA G V   R + +N  +A+K++    N Q   +K  +++  + M++      V+F 
Sbjct: 392 IGQGASGDVYSARQVGTNLSVAIKKM--NINQQ--PKKEFIVNEILVMKSHHHKNIVNFI 447

Query: 604 GAMFREGDVWICMEVM 651
              F + ++W+ ME M
Sbjct: 448 DTFFYKSELWMVMEYM 463


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 412 KICDLGRGAYGIVEKMRHLPSNTIMAVKRI 501
           K+  +G G YG+V K RH  S  I+A+K+I
Sbjct: 6   KVEKIGEGTYGVVYKARHKLSGRIVAMKKI 35


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +1

Query: 385 FTVHADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVS 564
           + ++A+    +  LG G++G+V K R   S  I+A+K+I        +      ++ +V 
Sbjct: 2   YPLNANSYTLLRKLGSGSFGVVWKARENVSGDIIAIKQIDLETGIDDITD----IEQEVF 57

Query: 565 MRASA-CPYTVHFYGAMFREGDVWICMEVM 651
           M ++      + +YG       +WI ME M
Sbjct: 58  MLSNCNSSNVIQYYGCFVDGYTLWILMEHM 87


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = +1

Query: 421 DLGRGAYGIVEKMRHLPS--NTIMAVKRITATFNNQSLEQKRLLMDL 555
           +LG+GAYGIV   R++ S     +A+K+IT  F ++S+  KR L ++
Sbjct: 26  ELGQGAYGIVCAARNVASKDQEAVAIKKITNVF-SKSILTKRALREI 71


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 24/84 (28%), Positives = 42/84 (50%)
 Frame = +1

Query: 394 HADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMRA 573
           H D LVK   LG+G YG V   +   ++ ++A+K +  +   Q  E K +L + D+    
Sbjct: 161 HFDLLVK---LGQGGYGSVWLAKKRNTHELLAMKMMKKSTLQQLNEVKHILNERDILTNT 217

Query: 574 SACPYTVHFYGAMFREGDVWICME 645
           ++  + V  Y A   +  V++ ME
Sbjct: 218 NS-EWLVKLYYAFQDKEKVYLAME 240


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 424 LGRGAYGIVEKMRHLPSNTIMAVKRI 501
           +G+GAYG+V    H PS   +AVK+I
Sbjct: 45  IGQGAYGVVCAALHKPSGLKVAVKKI 70


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +1

Query: 400 DDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRI--TATFNNQSLEQKRLLMDLDVSMRA 573
           +D   I  +G+GA+G V  ++ L +  I A+K +  T  F    L   +   DL V    
Sbjct: 91  EDFSTIKVIGKGAFGEVRLVQKLDTGKIYAMKSLLKTEMFKRDQLAHVKAERDLLVE--- 147

Query: 574 SACPYTVHFYGAMFREGDVWICMEVM 651
           S  P+ V  Y A      +++ ME +
Sbjct: 148 SDSPWVVSLYYAFQDSLYLYLIMEFL 173


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 22/89 (24%), Positives = 42/89 (47%)
 Frame = +1

Query: 379 RTFTVHADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLD 558
           RT   H D    I  +G+G YG V   R   +  I+A+K +  +  ++  E + +L + D
Sbjct: 200 RTRISHGD-FQTITQVGQGGYGSVWLARKRDTKEIVALKIMNKSVLHKMDEIRHVLTERD 258

Query: 559 VSMRASACPYTVHFYGAMFREGDVWICME 645
           +   A++  + V    A     ++++ ME
Sbjct: 259 ILTTANS-EWLVRLLYAFQDTSNIYLAME 286


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 394 HADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQS 525
           + +D  +   LGRG +G V  +R+       A+K+I +TF   S
Sbjct: 167 YIEDFEEYSLLGRGGFGSVYHVRNKIDGAEYAMKKINSTFQQMS 210


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +1

Query: 340 GNLDKQTTITVDDRTFTVHADDLVKICDLGRGAYGIVEKMRHLPSN-TIMAVKRITATFN 516
           G  +K       D  F   A + +  C +GR  + I E + H PSN T+   + I  T  
Sbjct: 326 GESEKDEKPDNTDVEFQTIAIEPLGDCIVGRERFKICEPIFHRPSNETVSLPEAIYITIK 385

Query: 517 NQSLEQKR 540
           N +   KR
Sbjct: 386 NYAANYKR 393


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +1

Query: 424 LGRGAYGIVEKMRHLPSNTIMAVKRI--TATFNNQSLEQKRLL 546
           +G G++G+V ++  + S++  A+KR+     F N+ L+  R++
Sbjct: 38  VGSGSFGVVMQVHLIESDSKAAIKRVLQDKRFKNRELQIMRIM 80


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +1

Query: 424 LGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQ 534
           LG G +  V  ++++ +  + A+K+I  +F N+ +++
Sbjct: 38  LGEGGFAFVYLVQNVSNEKLYALKKIKCSFGNKGIKK 74


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 382 TFTVHADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRI 501
           T+T       KI  +G G YG V K  +  +  ++A+KRI
Sbjct: 269 TYTYPKPAYEKIDQIGEGTYGKVYKAINTVTGDLVALKRI 308


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
 Frame = +1

Query: 343 NLDKQTTITVDDRTFTVHADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRI--TATFN 516
           N++    + V+D   T      + +  LG G +G V + + L +  I+A+K I     F 
Sbjct: 109 NVNHDYVLYVNDLLGTDEGRKYLILDTLGHGTFGQVARCQDLKTQQIVAIKVIKNKPAFY 168

Query: 517 NQSLEQKRLLMDLDVSMRASACPYTVHFYGAMFREGDVWICMEVM 651
           NQ + +  +L  L+         + +  Y     +  + +  E++
Sbjct: 169 NQCVMEVSILELLNNKYDPEDKRHLIRLYDQFMHKNHLCLVFELL 213


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 430 RGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMRASACP 585
           RG YG ++K R+   N   A  R   T   QS + KR ++ L+   RA+  P
Sbjct: 85  RGLYGKLKKKRNAHYNVASAKLRSAYTKLEQSKQNKR-IVPLEREPRAARPP 135


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 400 DDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRI 501
           DD   +  +  G+YGIV +     +NT++A+K+I
Sbjct: 72  DDYEILEKIEEGSYGIVYRGLDKSTNTLVALKKI 105


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 400 DDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMRASA 579
           DD V +  +G+G +G V  +R   +  + A+K ++     +  E    + + D+ ++ SA
Sbjct: 264 DDFVPLKLIGKGTFGQVYLVRKKDTERVYAMKVLSKKVIVRRKEVAHTVGERDILVQTSA 323

Query: 580 C--PYTVHFYGAMFREGDVWICMEVM 651
              P+ V    +     D+++  + M
Sbjct: 324 ADSPFIVALRFSFQTPKDLYLVTDYM 349


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 99  IIAYINALCTFII*LC--NS*LSYNHGSW 179
           IIAYIN+  TFI  LC  +  LS   GSW
Sbjct: 507 IIAYINSTRTFIPILCHVSKPLSDFDGSW 535


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +1

Query: 424 LGRGAYGIVEKMRHLPSNTIMAVKRITATFNNQSLEQKRLLMDLDVSMRASACPYTVHFY 603
           LGRG +G V K+++       AVK++    +++  E  R+L ++ +++      + V +Y
Sbjct: 562 LGRGGFGEVVKVKNRIDGRFYAVKKLVLLSDDK--ENSRILREV-MTLSRLHHEHVVRYY 618

Query: 604 GA 609
            A
Sbjct: 619 TA 620


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 247 VLTSQLSVLLNNRIKYPSKRFDNQDPWL*LSHELHNYMINVHNALIY 107
           +LT QL++ L++ + Y  +  D   P       LH+++I+   +L Y
Sbjct: 39  ILTEQLALKLDSELGYVKQVLDETLPKKGYEKALHSFIIHEDPSLNY 85


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 466 LPSNTIMAVKRITATFNNQSLEQK---RLLMDLDVSMRASACPYTVHF 600
           LP    ++VK +  T  +++L +K    LL   + S+ ASA  Y+ HF
Sbjct: 380 LPMGASISVKALVNTRCDKNLSEKGEKSLLDSAENSLPASANQYSTHF 427


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 274 LDISPLVLAVLTSQLSVLLNNRIKYPSK 191
           LD+SP  +  L  Q  V +N R+ YP++
Sbjct: 465 LDLSPDKVIQLREQNGVAVNGRVCYPTR 492


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 394 HADDLVKICDLGRGAYGIVEKMRHLPSNTIMAVKRI 501
           +A D  ++  LG+G YG V K R+       A+K+I
Sbjct: 220 YASDFEELELLGKGGYGSVYKARNKFDGVEYALKKI 255


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 116 INICNNSYMKTIN--FSMNDIFLYFNLF 39
           + IC+NSY   +N  F +N + +Y ++F
Sbjct: 99  VTICSNSYSILVNYGFILNMVHMYVHVF 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,754
Number of Sequences: 5004
Number of extensions: 53729
Number of successful extensions: 197
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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