Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_K11
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   2.4  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.5  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    25   7.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   7.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.5  

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 443 LAQLYSTPCFDRLRKEKPGVFQSKVLVVPGDVMEDGLGLSDE 568
           L  L++   +D L ++ PGVFQS     P D+  D   +S E
Sbjct: 533 LLTLFALTFWDILFEDVPGVFQSPFQSAPLDLHTDSFYISRE 574


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 274 PCPHYTGVLQRKIDFYNRRLWIHWEDSHRKT 366
           P PHY   +   I  Y RR W+  ED HR T
Sbjct: 22  PPPHYDYSIPCFIKGYVRRFWMRSED-HRGT 51


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 258 SDNPILVLSTNKLRSRGITEN*WYFDDIFKTVSLLETLDAKTLDAK 121
           S+  I+ L++ K  + GI    W+ DDI  +   LE L+   L  K
Sbjct: 683 SNGNIIPLNSVKFHNSGIQSLTWFSDDILFSTGGLEELNVYRLIQK 728


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 552 NPSSITSPGTTRTLD*NTPGFS 487
           NPSS+TSP ++ ++D   P F+
Sbjct: 38  NPSSLTSPSSSTSVDKKKPLFT 59


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 602 QYSLVRREVSCLRLINLIHLPLHLQA 525
           QY + R  V+  +  NLIHLP  L A
Sbjct: 191 QYVIARHLVAICKQYNLIHLPRSLPA 216


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 544 FHYISRHNEDFGLKHARFFFAKPIEARSRIQLSQSF 437
           F+  S   +DFG+ HAR    K I++  R    QSF
Sbjct: 100 FYRRSSSTDDFGISHAR--SRKEIQSLGRPHTRQSF 133


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 512  KVLVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRFDDP 640
            K+ VV GD+  +  G+ +     L E V+ V H  A V +  P
Sbjct: 1066 KISVVNGDLALENWGIEERKWNKLTEVVDYVIHNGALVHWVYP 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,626
Number of Sequences: 5004
Number of extensions: 57233
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)