Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_K11
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 52 5e-07
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 51 7e-07
04_03_0545 + 16996340-16996418,16998039-16998142,16999796-169999... 49 3e-06
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 45 6e-05
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 42 4e-04
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 41 7e-04
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 40 0.001
07_03_0075 - 13096386-13096554,13096642-13096766,13096851-130971... 31 1.1
05_02_0072 - 6334613-6335215 29 3.2
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 28 5.6
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Frame = +2
Query: 353 VIEKLLYSCTDLDRIYLLMRPKKSVSPDKR-LAQLYSTPCFDRLRKEKPGVFQS----KV 517
++EK+L ++ ++YLL+R +++ ++R L ++ FD LR++ F S K+
Sbjct: 28 LVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGKGLFDVLREQYGAGFNSFIKEKI 87
Query: 518 LVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRF 631
+PGDVM + GL + L+++V+I+ + AA+ F
Sbjct: 88 YALPGDVMHENFGLESYEVLQLSQKVDIIVNGAATTNF 125
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Frame = +2
Query: 353 VIEKLLYSCTDLDRIYLLMRPKKSVSPDKR-LAQLYSTPCFDRLRKEKPGVFQS----KV 517
++EK+L ++ ++YLL+R +++ ++R L ++ FD LR++ F S K+
Sbjct: 28 LVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFDVLREQYGAGFHSFIKEKI 87
Query: 518 LVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRF 631
+PGDV + GL D L+++V+I+ + AA+ F
Sbjct: 88 YALPGDVTHENFGLESYDILQLSQKVDIIVNGAATTNF 125
>04_03_0545 +
16996340-16996418,16998039-16998142,16999796-16999995,
17000186-17000228
Length = 141
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Frame = +2
Query: 353 VIEKLLYSCTDLDRIYLLMR-PKKSVSPDKRLAQLYSTPCFDRLRKEKPGVFQS----KV 517
++EK+L D+ ++YLL+R P + + ++ L ++ FD LR++ F S KV
Sbjct: 28 LVEKILRIQPDVRKLYLLVRAPDAAAAKERLLTEVVGKGLFDVLREQHGASFHSFIKEKV 87
Query: 518 LVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRF 631
+PGD+ GL + + L++ V+I+ + AA+ F
Sbjct: 88 CPLPGDITHQNFGLGNSEILRLSQDVDIIVNGAATTNF 125
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 44.8 bits (101), Expect = 6e-05
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Frame = +2
Query: 353 VIEKLLYSCTDLDRIYLLMRPKKSVSPDKRL-AQLYSTPCFDRLRKEKPG-----VFQSK 514
++EK+L D+ +IYLL+R S ++R+ +++ T F + KEK G + K
Sbjct: 33 LVEKILRVQPDVKKIYLLVRAIDQASANQRVQSEVTETELFSVV-KEKHGKGFSRFIEEK 91
Query: 515 VLVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRF 631
V+ + GD++ D LGL + LA+ ++++ + AA+ F
Sbjct: 92 VVALAGDIIYDDLGLDPPLLQHLADNLDVIVNGAATTNF 130
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Frame = +2
Query: 353 VIEKLLYSCTDLDRIYLLMRPKKSVSPDKRL-AQLYSTPCFDRLRKEKPGVFQS----KV 517
++EK+L D+ +IYL +R + + +R+ ++ F L+++ FQS KV
Sbjct: 28 LVEKILRVQPDVRKIYLPVRAVDAATAKQRMQTEVIGKELFGLLKEQHGKGFQSFIDEKV 87
Query: 518 LVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRF 631
+ + D+M LGL + + LA+ +NI+ + AA+ F
Sbjct: 88 VPLAADMMHQNLGLEESTLQELAKDLNIIVNGAATTNF 125
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 41.1 bits (92), Expect = 7e-04
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Frame = +2
Query: 356 IEKLLYSCTDLDRIYLLMRPKKSVSPDKR-LAQLYSTPCFDRLRKEKPGVFQS----KVL 520
+EK+L D+ +I+LL+R + S ++R L ++ F LR+ F S K+
Sbjct: 440 VEKILRIQPDVKKIFLLVRAADTSSAEQRVLNEVIGNELFGPLRENYGSNFYSFMKEKIS 499
Query: 521 VVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRF 631
+ GD++ + LGL + L++ ++I+ + AA+ F
Sbjct: 500 PLAGDIINENLGLESLEILKLSKEIDIIVNGAATTNF 536
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Frame = +2
Query: 353 VIEKLLYSCTDLDRIYLLMRPKKSVSPDKRLAQLYSTPCFDRLRKEKPGV-FQS----KV 517
++EK+L D+ ++YLL+R S +R+ + ++ KEK G F+S KV
Sbjct: 28 LVEKILRVQPDVKKLYLLVRANDVESATRRVQDEVTGKEIFQVLKEKHGDGFESFVEEKV 87
Query: 518 LVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRF 631
+ GD++ + LGL L+ ++I+ + AA+ F
Sbjct: 88 CTLAGDIIYENLGLDSAKLTELSNEIDIIVNGAATTNF 125
>07_03_0075 -
13096386-13096554,13096642-13096766,13096851-13097117,
13097506-13097587,13097956-13098172,13098260-13098360,
13098425-13098627,13099261-13099334,13100246-13100429
Length = 473
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +2
Query: 443 LAQLYSTPCFDRLRKEKPGVFQS----KVLVVPGDVMEDGLGLSDED-RKLLAERVNIVF 607
+A + P F LR++ F S KV + GDV G+ D + + + NI+
Sbjct: 84 VAAIMQLPIFQPLREKYQTHFSSWFWDKVFPLAGDVSLKNFGIGDARLAEDIRKETNIIV 143
Query: 608 HIAASVRF 631
H+AA+V F
Sbjct: 144 HMAATVNF 151
>05_02_0072 - 6334613-6335215
Length = 200
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +2
Query: 494 PGVFQSKVLVVPGDVMEDGLGLSDEDRKLLAERVNIVFHIAASVRFDD 637
P + V GDV L L LLAER+N V H AA DD
Sbjct: 70 PAMASPNFAFVRGDVASADLVL----HLLLAERINTVMHFAAHTHVDD 113
>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
Length = 922
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 438 LSGLTDFLGRISRYILSKSVQEYSSFSMTIFPMNP 334
LSG T FL R+ ++ SK + S M + M P
Sbjct: 755 LSGWTGFLPRLPAWMNSKRIPNLSKLDMKVLAMEP 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,935
Number of Sequences: 37544
Number of extensions: 322613
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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