Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_K06
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66513-7|CAA91336.2|  289|Caenorhabditis elegans Hypothetical pr...    39   0.003
Y08815-1|CAA70049.1|  289|Caenorhabditis elegans TFIIE-beta prot...    39   0.003
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z66513-7|CAA91336.2|  289|Caenorhabditis elegans Hypothetical
           protein F54D5.11 protein.
          Length = 289

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 262 SSSYRFGVLARIVRHMRARHQDGDDHPLSLDEILDETNQLDVGNK 396
           S++  F  +A+IV +M+ RH +    PL+L EILDE    D+  +
Sbjct: 72  SNATNFSTMAKIVDYMKKRHLNNQQWPLTLQEILDELQIFDLSKR 116



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 80  MDPALLREREAFKKKALATPSIE 148
           MDP LLR+R AF+K A  T +++
Sbjct: 1   MDPELLRQRTAFQKHAATTMAVQ 23


>Y08815-1|CAA70049.1|  289|Caenorhabditis elegans TFIIE-beta protein
           protein.
          Length = 289

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 262 SSSYRFGVLARIVRHMRARHQDGDDHPLSLDEILDETNQLDVGNK 396
           S++  F  +A+IV +M+ RH +    PL+L EILDE    D+  +
Sbjct: 72  SNATNFSTMAKIVDYMKKRHLNNQQWPLTLQEILDELQIFDLSKR 116



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 80  MDPALLREREAFKKKALATPSIE 148
           MDP LLR+R AF+K A  T +++
Sbjct: 1   MDPELLRQRTAFQKHAATTMAVQ 23


>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
            ZK337.1c protein.
          Length = 1516

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -3

Query: 373  LSHLKSHLKTVDGHLHLDALLSYAVQYALAHQSDR 269
            +++L+ HL  V G+ +  A+++YA+Q A + Q+ +
Sbjct: 1139 VTYLEKHLDEVSGNAYTMAVVAYALQLAKSKQAGK 1173


>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
            ZK337.1b protein.
          Length = 1501

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -3

Query: 373  LSHLKSHLKTVDGHLHLDALLSYAVQYALAHQSDR 269
            +++L+ HL  V G+ +  A+++YA+Q A + Q+ +
Sbjct: 1142 VTYLEKHLDEVSGNAYTMAVVAYALQLAKSKQAGK 1176


>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
            ZK337.1a protein.
          Length = 1508

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -3

Query: 373  LSHLKSHLKTVDGHLHLDALLSYAVQYALAHQSDR 269
            +++L+ HL  V G+ +  A+++YA+Q A + Q+ +
Sbjct: 1131 VTYLEKHLDEVSGNAYTMAVVAYALQLAKSKQAGK 1165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,666
Number of Sequences: 27780
Number of extensions: 240906
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)