Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_K04
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.73 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   1.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    26   3.9  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   5.2  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 315 KYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQNCKQLEADSVKQND 494
           K+ LP  PT   +  +  +  +   + S    T DEA+      FQ     E + V  ND
Sbjct: 456 KFQLPPRPTSNTLPLEPEEELVTRYSVSSDGNTVDEAITKQSQTFQLVNSNEFNEVNAND 515

Query: 495 LNIKLQELNKKL 530
           ++  L++   KL
Sbjct: 516 VHKSLRQNCAKL 527


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 423  ALQNAYSCFQNCKQLEADSVKQNDLNIKLQELNKKL 530
            A  N YSCF +   LE   +KQ + N +  ++ K +
Sbjct: 1386 AAMNMYSCFLDLFLLEVSDLKQTECNAQSDKIIKSI 1421


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 149 LYSIGSHKTLRNDILDK*QVNY*PLFNAGFEPYSLKETDYIQNKS 15
           L S G  KTLRN+   +       +FN+G  P   K T+Y+  K+
Sbjct: 175 LESFGCAKTLRNNNSSRHGKYLEMIFNSGGVPVGAKITNYLLEKN 219


>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 450 QNCKQLEADSVKQNDLNIKLQELNK 524
           ++CKQ  A+ +K+ DLN KL  L++
Sbjct: 54  KSCKQEYANLIKERDLNKKLDMLDE 78


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
 Frame = +3

Query: 306 KMDKYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYS-----CFQNCKQLE 470
           K+D    P LP P H        E L  +  F  +     +  AYS      F+ C  L 
Sbjct: 278 KLDYAPAPKLPPPSHEESYNPPEEYLKQSSDFPKKYKSLRVVPAYSNLIKEKFERCLDLY 337

Query: 471 -ADSVKQNDLNIKLQELNKKL 530
            A  V++  LNI  + L  KL
Sbjct: 338 LAPRVRRTKLNIDPESLLPKL 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,004
Number of Sequences: 5004
Number of extensions: 43571
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)