Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_K04
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY184206-1|AAO27774.1| 3212|Homo sapiens nesprin-1 beta 2 protein.     31   3.4  
AY061755-1|AAL33798.1| 3321|Homo sapiens nesprin-1 beta protein.       31   3.4  
AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein.            31   3.4  

>AY184206-1|AAO27774.1| 3212|Homo sapiens nesprin-1 beta 2 protein.
          Length = 3212

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +3

Query: 315  KYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQ---NCKQLEADSVK 485
            ++A+  + +   ++E+A   +  N+  S   +   E LQ  Y  F+   NCKQL  D V 
Sbjct: 1328 RHAISEVMSWTSLMENAIQKDEDNIKNSIGYKAIHEYLQK-YKGFKIDINCKQLTVDFVN 1386

Query: 486  QNDLNIKLQELNKK 527
            Q+ L I  Q++  K
Sbjct: 1387 QSVLQISSQDVESK 1400


>AY061755-1|AAL33798.1| 3321|Homo sapiens nesprin-1 beta protein.
          Length = 3321

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +3

Query: 315  KYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQ---NCKQLEADSVK 485
            ++A+  + +   ++E+A   +  N+  S   +   E LQ  Y  F+   NCKQL  D V 
Sbjct: 1437 RHAISEVMSWTSLMENAIQKDEDNIKNSIGYKAIHEYLQK-YKGFKIDINCKQLTVDFVN 1495

Query: 486  QNDLNIKLQELNKK 527
            Q+ L I  Q++  K
Sbjct: 1496 QSVLQISSQDVESK 1509


>AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein.
          Length = 8797

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = +3

Query: 315  KYALPNLPTPQHVLEDASDSEILNLTYSFKLQTDDEALQNAYSCFQ---NCKQLEADSVK 485
            ++A+  + +   ++E+A   +  N+  S   +   E LQ  Y  F+   NCKQL  D V 
Sbjct: 6913 RHAISEVMSWTSLMENAIQKDEDNIKNSIGYKAIHEYLQK-YKGFKIDINCKQLTVDFVN 6971

Query: 486  QNDLNIKLQELNKK 527
            Q+ L I  Q++  K
Sbjct: 6972 QSVLQISSQDVESK 6985


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,056,430
Number of Sequences: 237096
Number of extensions: 1259430
Number of successful extensions: 2035
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)