Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_K03
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 28 1.0
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 2.4
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 4.2
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 4.2
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 26 4.2
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 25 7.3
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 7.3
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 7.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 7.3
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 424 PVIIPSDVPLPLIVERNLTAVSPSLQPFLNLQWPLKDKKSPPWS 555
P+ PS+ L I+ RN + S Q PL D K PP+S
Sbjct: 89 PIPPPSEQSLDTIIYRNPSVSSSQSQEPEEFFLPLDDGKKPPYS 132
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 433 IPSDVPLPLIVERNL--TAVSPSLQPFLNLQWPLKDKKSPPWSRKPPTKEEIDDAVLKGK 606
I ++ + L R L + ++P + F+ L W + +K P+ R+ + +DD+ K
Sbjct: 258 IMGEIAMTLTKLRELFPSKLTPYVVTFVELVWNIIEKLLDPYIREVVFSDGLDDSAFGDK 317
Query: 607 AALKELIKV 633
++ L+++
Sbjct: 318 YPIRYLVEL 326
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 427 VIIPSDVPLPLIVERNL-TAVSPSLQPFLNLQWPLKD 534
+I+PS+ P PL+ E L AV S Q F QW + D
Sbjct: 910 IILPSEFPNPLVDEAYLHPAVDDSKQSF---QWGIPD 943
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 20 RKLTVVFLTCFIFKYILCVLAFFYFV 97
R LTV+ + F+F +IL ++AF F+
Sbjct: 489 RILTVILVVYFLFWHILGLVAFLIFI 514
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 295 VVLIAILGISLLVTVSYNLAEGVFDDIENENGTETLSTKTTAKPVIIPSDVPL----PLI 462
+V + +G + L+ +L++GVFDD + L + P ++PL P +
Sbjct: 211 IVNLIPIGGAKLIQGGNSLSKGVFDDSRTREIVDNLMKQGFMHQPESPLNMPLQSARPFV 270
Query: 463 VERNLTAV 486
V R L AV
Sbjct: 271 VPRKLYAV 278
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 349 LAEGVFDDIENENGTETLSTKTTAKPVIIPSDVPLPLIVERNLTAVSPS 495
+ EG+ D+ N T + + TTA+P I +D P V +PS
Sbjct: 103 IQEGISDERSQSNSTFSNAISTTAEPSIAMNDT-TPQTVNPTKAPSNPS 150
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 379 NENGTETLSTKTTAKPVIIPSDVPLPLIVERNLTAVSPSLQPFLNLQWPLKDKKSPPWSR 558
N +G++ +K ++ IPSD PLP V S S + +L +KD P R
Sbjct: 59 NSSGSDN-DSKVSSPSREIPSDPPLPRAVPTVRLGRSTSSRSRNSLNLDMKDPSEKP-RR 116
Query: 559 KPPT 570
PT
Sbjct: 117 SLPT 120
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 7.3
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 460 IVERNLTAVSPSLQPFLNLQWPLKDKKSPPWSRKPPTKEEIDDAVLKGKAALKELIKVEN 639
+V+ N++ SP L WP K KS +RK T E + A + K A K V+
Sbjct: 1 MVKTNISKNSPKEATVPELDWPFKLIKSHLETRKLET-ENVWIACFEPKYASKVTQYVKQ 59
Query: 640 LRKPLK 657
+R K
Sbjct: 60 IRSKQK 65
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 213 QGRTLRASGRTLHRGKSKGNSSCINYLNNHSHKRSI 106
+GR+ S R+ + +S S + +NN +HK+ I
Sbjct: 640 RGRSYSRSTRSYSKSRSYSRSRSVTPINNINHKKYI 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,966
Number of Sequences: 5004
Number of extensions: 55257
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -