Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_K02
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 30 0.25
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 28 1.3
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.1
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 4.1
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 26 5.4
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 5.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.4
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 9.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.5
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 25 9.5
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 30.3 bits (65), Expect = 0.25
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Frame = +2
Query: 164 NSGGLHKDQAEKYR---NVLMEILKSTEQELS-----ESLKAFIEAIVNENVSLVIS--- 310
NSG +H +Q E+Y N+ +++L+ T+ S S+K +N V L I
Sbjct: 697 NSGTMHMEQLERYHASANIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSG 756
Query: 311 --RQLLTDVSTHLALLADNVSQE 373
R L T +S +LL D++SQ+
Sbjct: 757 IHRSLGTHISKTRSLLLDSLSQQ 779
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 272 EAIVNENV-SLVISRQLLTDVSTHLALL-ADNVSQEVSHFALDVIQPRVISFEEQVAXI 442
E+I+NE V I+ +L + +T+ A++ +N S + H ALD+IQ R+ EE+ +
Sbjct: 422 ESIMNEAVCDQKITIRLPINSNTNEAVVECENKSMQSKH-ALDIIQERIKDLEEKAQVV 479
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 321 KSCLEITRLTFSLTIASMNAFNDSDNSCSVLFSISIR 211
KS E + FS+T S+ ++ CS F +S R
Sbjct: 26 KSSFEEKKHNFSITNKSLETLRSQESPCSTTFPVSDR 62
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 224 LKSTEQELSESLKAFIEAIVNENVSLVISRQLLTD 328
L + E+ ++ + +EAI+ EN+ +++ Q L D
Sbjct: 957 LAKQKSEIEQAFQGDMEAIIAENLEIMVESQSLED 991
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 368 VKHYQPAVLSVCSHLSRVALKS-LGSHFH 285
++ Y AVLS+CS L+R ++ S + ++H
Sbjct: 155 IEQYLHAVLSLCSELARQSVNSVISGNYH 183
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 128 LQSVRQYLSELRNSGGLHKDQAEKYRNVLMEILKSTEQ 241
+Q R+YL L LH E NVL+E + +Q
Sbjct: 88 MQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQ 125
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 194 EKYRNVLMEILKSTEQELSESLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQE 373
E+ R+VL L++ E + + SL+ ++ N+ SL + + + HL LLA S +
Sbjct: 434 EEERDVLESKLQTLEDD-NNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDK 492
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.0 bits (52), Expect = 9.5
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Frame = +2
Query: 182 KDQAEKYRNVLMEILKSTEQELSESLK----AFIEAIVN--ENVSLVISRQLLTDVSTHL 343
KD+ K R+ L+E LKS E S LK A E+ V+ +NVS ++ ++ + +S+ L
Sbjct: 17 KDKLLKKRDALIEDLKSPE-GASNLLKLQSFAKFESTVDALDNVSALVEGKVSSKLSSLL 75
Query: 344 ALLADNVS 367
L+D+ S
Sbjct: 76 EGLSDSKS 83
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 254 SLKAFIEAIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQV 433
SLK ++ V LVI + D++ L + SH+ QP ++ FE++V
Sbjct: 2002 SLKDHFRLSFDDPVDLVIPAKSFLDIT-----LPAKDANRASHYPFPKTQPTLLKFEDEV 2056
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 26 TGLILTKIYLPADYH*LILAKVYPAY*EIKMPVNLQSVRQYLSELRNS 169
T L +T+ L + + + L K+Y E + P + SV Q LS++RNS
Sbjct: 52 TKLYITEESLQKEVN-IFLTKIYIRESEREPPQSHNSVFQLLSKIRNS 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,991
Number of Sequences: 5004
Number of extensions: 42079
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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