Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_J13
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 34 0.020
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 31 0.11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 29 0.58
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 28 1.3
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 4.1
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 26 4.1
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 26 5.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 5.4
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 5.4
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 9.5
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 33.9 bits (74), Expect = 0.020
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Frame = +3
Query: 165 IAQSFLAFKTPLGTKFNEKV--PEKCRFTPKMIFDFXXXXXXXXGLWIDLTNTSRFYDKG 338
I+ F+AF +P+ +N P+K ++ D+ L + L YDK
Sbjct: 186 ISPKFIAFASPIQAGWNHASTRPKKLPQPFAIVLDYFVANKVK--LIVRLNGP--LYDKK 241
Query: 339 EIEEMDCKYMKIQCKGHGEAPSEDQIRVFIHTVKNFMKKKPLELIAVHCTHGFNRTGFLI 518
E + ++ ++ + G P ++ FI + + +IAVHC G RTG LI
Sbjct: 242 TFENVGIRHKEMYFED-GTVPELSLVKEFIDLTEEVEEDG---VIAVHCKAGLGRTGCLI 297
Query: 519 VSFMV 533
++++
Sbjct: 298 GAYLI 302
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 456 KPLELIAVHCTHGFNRTGFLIVSFMVQEMDCSIEAALKEFNTKR 587
+PL + VHC G RTG +I S++V + + +L+ + KR
Sbjct: 120 QPLLTLVVHCKAGKGRTGTVICSYLVAFGGLTAKQSLELYTEKR 163
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -2
Query: 425 EDPYLVFTRCLSVTFALYFHIFTVHFLYLPFIVKSA 318
++ YLV T +S+ ++ HIFT+ FL+ F++K A
Sbjct: 17 DNNYLV-TTLISLKENVFLHIFTLTFLFKAFLLKMA 51
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 275 TFREVENHFRRKTTLFGHFFIEFCAQWCFKG*KRLGY*RCTLSRAIQPPTGQWTWITFRH 96
T+ E + + T + G+ IE CF G KRLG+ R L + + G ++ R
Sbjct: 27 TYAEEGQMYAQVTKMLGNGRIEAA---CFDGVKRLGHIRGKLRKKVWINQGDIILLSLRE 83
Query: 95 FQ 90
FQ
Sbjct: 84 FQ 85
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -3
Query: 193 VLKAKNDWAIKDVHF-----LGQFNHLLGSGPGSLFDIFSRAT 80
V K+K+ ++D HF G+F +LGSG G I R++
Sbjct: 281 VSKSKSSANLQDDHFGLFKKYGKFGRMLGSGAGGSVRIMKRSS 323
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 277 ILLEKSKIILGVKRHFS-GTFSLNFVPNGVLKAKNDWAIKDVHFLGQFNHLLGSGPG 110
+LLE II KRHFS G +L ++ G+L A +F G +N L + G
Sbjct: 346 LLLEAYPIIFAEKRHFSLGVDALPYI--GLLVGVILGAALIAYFQGYYNRKLDANGG 400
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 291 GLWIDLTNTSRFYDKGEIEEMDCK 362
G+ + L N+++FY+ G++ E+D K
Sbjct: 177 GVLLALRNSAKFYENGKLVEIDGK 200
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 450 KKKPLELIAVHCTHGFNRTGFLIVSFMVQEMDCS 551
+KKP E+I + H T +++ F++ CS
Sbjct: 174 QKKPEEVIPLELQHSIRTTIHILLDFILDVFSCS 207
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/53 (22%), Positives = 21/53 (39%)
Frame = +3
Query: 360 KYMKIQCKGHGEAPSEDQIRVFIHTVKNFMKKKPLELIAVHCTHGFNRTGFLI 518
K+ K C P + + + K + +HC+ G +RTG +I
Sbjct: 124 KHRKNDCISSSSNPDISDVDDLVRKTLQLLLNKENWPVLLHCSRGKHRTGIVI 176
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 277 ILLEKSKIILGVKRHFS-GTFSLNFV 203
+LLE II G KRHFS G L ++
Sbjct: 385 LLLEAYPIIFGEKRHFSMGVAELPYI 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,081
Number of Sequences: 5004
Number of extensions: 57218
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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