Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_J13
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 130 1e-30
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 104 8e-26
07_01_1085 + 9890369-9892114,9892213-9892731 33 0.26
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371 33 0.26
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 28 5.6
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 28 5.6
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 130 bits (313), Expect = 1e-30
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 4/179 (2%)
Frame = +3
Query: 123 PSRWLNCPRKCTSLIAQSFLAFKTPLGTKFNEKVPEKCRFTPKMIFDFXXXXXXXXGLWI 302
P WL+CP + + K PL FNE VP R++ K + + GL I
Sbjct: 82 PQGWLDCPGSGEPI--DRIVPSKVPLDETFNESVPAGKRYSSKQVVNKQRKAGRDIGLVI 139
Query: 303 DLTNTSRFYDKGEIEEMDCKYMKIQCKGHGEAPSEDQIRVFIHTVKNFMKKKPL----EL 470
DLTNT+R+Y E KY+KI CKG P + + F++ V F+ ++ +
Sbjct: 140 DLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTFVYEVMAFLDRQKQSRNPKY 199
Query: 471 IAVHCTHGFNRTGFLIVSFMVQEMDCSIEAALKEFNTKRXPGIYKQDYLTELFKLYGDV 647
I VHCTHG NRTGF+IV ++++ S+ AL F +R PGIYK DY+ ++ Y ++
Sbjct: 200 ILVHCTHGHNRTGFMIVHYLMRTQLSSVTEALNIFAQRRPPGIYKNDYIQAIYSFYHEI 258
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 104 bits (250), Expect(2) = 8e-26
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Frame = +3
Query: 291 GLWIDLTNTSRFYDKGEIEEMDCKYMKIQCKGHGEAPSEDQIRVFIHTVKNFMKK----K 458
GL IDLTNT+R+Y E K++KI CKG P + + F++ V F+ + K
Sbjct: 164 GLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQSK 223
Query: 459 PLELIAVHCTHGFNRTGFLIVSFMVQEMDCSIEAALKEFNTKRXPGIYKQDYLTELFKLY 638
+ I VHCTHG NRTGF+I+ ++++ + A+ F +R PGIYK+DY+ L+ Y
Sbjct: 224 NPKYILVHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEALYSFY 283
Query: 639 GDV 647
+V
Sbjct: 284 HEV 286
Score = 30.3 bits (65), Expect(2) = 8e-26
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 123 PSRWLNCPRKCTSLIAQSFLAFKTPLGTKFNEKVPEKCRFTPKMI 257
P W+NCP + + K PL FN+ VP R++ K +
Sbjct: 83 PDGWMNCPAFGEPI--DKIIPSKVPLDETFNDLVPPGKRYSSKQV 125
>07_01_1085 + 9890369-9892114,9892213-9892731
Length = 754
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +3
Query: 378 CKGHGEAPSEDQIRVFIHTVKNFMKKKPLELIAVHCTHGFNRT 506
C+ A S DQ R F HT KN +K P +L V T GF T
Sbjct: 45 CRSWATALSSDQFRGF-HTAKNKIKPLPPKLFFVSQTAGFGST 86
>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
Length = 722
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +3
Query: 378 CKGHGEAPSEDQIRVFIHTVKNFMKKKPLELIAVHCTHGFNRT 506
C+ A S DQ R F HT KN +K P +L V T GF T
Sbjct: 45 CRSWATALSSDQFRGF-HTAKNKIKPLPPKLFFVSQTAGFGST 86
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 444 FMKKKPLE-LIAVHCTHGFNRTGFLIVSFMVQ-EMDCSIEAALKEFNTKR 587
F K+ +E ++ VHC G RTG +I S ++ + + E +++ +N KR
Sbjct: 251 FEGKEDIENVVVVHCKAGKARTGLMISSLLLYLKFFPTAEESIEYYNQKR 300
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 387 HGEAPSEDQIRVFIHTVKNFMKKKPLEL-IAVHCTHGFNRTGFLI 518
HG + D +R ++ +++ P+E I VHC+ G RTG I
Sbjct: 229 HGVPTNTDAVR----QIRKWLQNTPMEHPIVVHCSAGIGRTGAYI 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,201
Number of Sequences: 37544
Number of extensions: 321751
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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