Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_J13
         (651 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             29   0.17 
AF164151-1|AAD47075.1|  148|Anopheles gambiae translation initia...    27   0.68 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   3.6  

>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 471  IAVHCTHGFNRTG-FLIVSFMVQEMDCSIEAALKEFNTKR 587
            I VHC+ G  RTG F+ +S +++ M    E  L  F T R
Sbjct: 1159 ITVHCSAGVGRTGVFITLSIVLERM--QYEGVLDVFQTVR 1196


>AF164151-1|AAD47075.1|  148|Anopheles gambiae translation
           initiation factor 4C (1A) protein.
          Length = 148

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 272 FREVENHFRRKTTLFGHFFIEFCAQWCFKG*KRLGY*RCTLSRAIQPPTGQWTWITFRHF 93
           F+E E  + + T + G+  +E     CF G KRL + R  L + +    G    I  R +
Sbjct: 28  FKEDEQEYAQVTKMLGNGRLE---AMCFDGVKRLCHIRGKLRKKVWINQGDIILIGLRDY 84

Query: 92  QQS 84
           Q S
Sbjct: 85  QDS 87


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 114 GPLPSRWLNCPRKCTSLIAQSFLAFKT 194
           GP  +RWL CP    ++   +++A  T
Sbjct: 610 GPNRNRWLECPELTKAMDGVTYIADHT 636


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,956
Number of Sequences: 2352
Number of extensions: 14583
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)