Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_J11
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    28   0.97 
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    27   2.2  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   3.0  

>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 151 QPMHGAVLLSCASRSAILLEKHSSRV 228
           +P+H A+ +SC ++S  ++ K+  +V
Sbjct: 132 EPLHDAICISCTNKSFFIISKNDHKV 157


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 193 SAILLEKHSSRVACAASIVASCDMLLNPSIPTPELMSVQKLAGS*LLK 336
           S  + + H+SRVA   S+  +    L+  IPT +L+   K+  S LL+
Sbjct: 303 SEFIKDNHTSRVAILISMKLAFQYQLSQVIPTLKLLLQSKVYDSVLLE 350


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 205 LEKHSSRVACAASIVAS-CDMLLNPSIPTPELMSVQKLAGS 324
           L++   R+     ++A  C+   NP + +P+L+ ++KLA S
Sbjct: 355 LDEFEKRLESGEKVMALFCEFPSNPLLNSPDLVRIRKLADS 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,811
Number of Sequences: 5004
Number of extensions: 21572
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)