Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P05_F_J09
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 29 0.58
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 29 0.77
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 27 2.3
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.1
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 5.4
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 7.2
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 7.2
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 9.5
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 25 9.5
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 29.1 bits (62), Expect = 0.58
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 310 EMDIKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEE 429
E I+ +++ ++ L+DE LR L + C +NE +E+
Sbjct: 16 EHSIREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQEK 55
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 421 EEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIEL 558
EE Q S + K N + GDD+ V + D +YLG I +L
Sbjct: 42 EEPFQKEAGRSYYRSLKKNDVIYRVGDDITVHDGDSSFYLGVICKL 87
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +1
Query: 337 KQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTE-KNNANPFHCGDDVLV 513
++L ELL DL IT A K D PD + NN C V
Sbjct: 260 EELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEAC-----V 314
Query: 514 ANKDGRYYLGTIIELS 561
GRY+ G ++E S
Sbjct: 315 RLMQGRYFDGRVVEAS 330
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = +1
Query: 310 EMDIKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNN 477
E +I+ + + + +E + D D+ ++ E++EEE +DA P+ +++KN+
Sbjct: 50 EQEIEEALEEDDTNYEEDIID-DEESAQVDEEELEEEEEEEEDATPEPVVTSKKNS 104
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 328 EVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNA 480
++ KQL + + +L+KT S E + +D D TTS+ K +
Sbjct: 211 QIQKQLECYNVRMMELNKTDENNESAICESQASSKEDERSDKTTSSSKKKS 261
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +1
Query: 367 RDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGT 546
R L +TIT + K + ++ D ++TTS K + + +++ N+ L
Sbjct: 488 RPLSQTITESSVAKTKSTTPKSTDTPTEATTSPVKVSTKNSNTTENLNGINESNMPMLQN 547
Query: 547 IIELSTSNDN 576
+ L TS D+
Sbjct: 548 GLPLRTSGDH 557
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +1
Query: 319 IKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNN 477
+ +E+S Q SLI + +L+K+I C+ + + E+ ++ S+ K++
Sbjct: 135 LNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDD 187
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 397 ASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRY 534
A K +EKK + +QDA D ++ + F ANK RY
Sbjct: 669 AKKLHEKKTKSSQDATIDHHLTSHSPESIAFKAVLAKFFANKTARY 714
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 424 EETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTSN-DNDLCEVGAS 600
++T P ST ++NN NP + + N + T++ + DLC + S
Sbjct: 138 DQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTPETLWQDLCLLSES 197
Query: 601 VARCL 615
A L
Sbjct: 198 FANSL 202
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 319 IKAEVSKQ-LSLIDELLRDLDKTITPCASKKNEKKEEETQD 438
IKA VS +S + +RDL +TP ++EK +E T D
Sbjct: 881 IKAIVSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTID 921
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 388 TPCASKKNEKKEEETQDAMPDSTTSTEKNN 477
T + ++NE++ EE +DA+ S +K N
Sbjct: 70 TQSSDQENEEEGEELEDAVAKEINSLQKKN 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,208
Number of Sequences: 5004
Number of extensions: 39755
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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