Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_J09
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.36 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 301 TILEMDIKAEVSKQLSLIDELLR-DLDKTITPCASKKNEKKEEETQDAMPDS 453
           TIL + +  E SK+L   DEL+R D    +  C+S+    +     D   DS
Sbjct: 382 TILTVQLIVEFSKRLPGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDS 433


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 449 TQQLAPRKTMLTHSTAEMMYLW 514
           TQ+   +   L+H+T EM++ W
Sbjct: 174 TQECKLQMESLSHTTDEMIFQW 195


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 307 LEMDIKAEVSKQLSLIDELLRDLDKTITPCASK 405
           L M I   + +     +  L +  ++I PCASK
Sbjct: 53  LSMTIPPSIDRSSIHEESYLAESSRSIDPCASK 85


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 444 ARLNN*HREKQC*PIPLR 497
           A+L N H    C P+P+R
Sbjct: 213 AKLRNVHSSSFCIPLPVR 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,963
Number of Sequences: 438
Number of extensions: 3316
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)