Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P05_F_J06
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   178   1e-45
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  178 bits (434), Expect = 1e-45
 Identities = 88/123 (71%), Positives = 99/123 (80%)
 Frame = +1

Query: 67  AGAKFRISLGLPXGSSNQLRRQHRXQRICM*SLSKXIKGRLNRLPAAGSGDMIVATVKKG 246
           +GAKFRISLGLP G+          + + + S+   I+GRLNRLP+AG GDM V +VKKG
Sbjct: 10  SGAKFRISLGLPVGAVMNCADNTGAKNLFVISVY-GIRGRLNRLPSAGVGDMFVCSVKKG 68

Query: 247 KPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADL 426
           KPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADL
Sbjct: 69  KPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADL 128

Query: 427 WPR 435
           WPR
Sbjct: 129 WPR 131


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 360 DYDTRIVLKVYKYSITPSERFPL 292
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical
           protein B0280.3 protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 11  FLSKFLIQQNV*ERTWWFXRERNSVSPWVSQXGAVINCAD 130
           F+  +  ++NV  R W+  ++R + +P + + G  I C D
Sbjct: 192 FIIDWQFEKNVSGRDWFAIQQRLANTPGIVETGLFIGCVD 231


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 474 NVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 361
           ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 86  SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,243,717
Number of Sequences: 27780
Number of extensions: 234783
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)